Scaffold Ga0114350_1006160

Overview

Basic Information

• Taxon OID: 3300008116
• Scaffold ID: Ga0114350_1006160
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14269
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (55.26%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014144	Metagenome / Metatranscriptome	265	Y
F027449	Metagenome / Metatranscriptome	194	Y
F052590	Metagenome / Metatranscriptome	142	Y
F060903	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114350_100616011	F027449	N/A	MYTDNMRRAFHSIQAPKNFVVNLIDNDSFLTIKLDERSFVNMTHDEKLEAVKYVSMLKKALEMEGAIVLVTREPLK*
Ga0114350_100616034	F060903	GAG	MNNWTEELTDKQKEQIWDFIVFTVKEIREQIALDIEYTYDVWATHGKAKSRQTKKAFMACADIARGLNENI*
Ga0114350_100616035	F014144	N/A	MEKGKVVICNICSKEIEVRWGIFGHDTLNRHKREHRDE*
Ga0114350_10061608	F052590	N/A	LEFLDIRSKMIVTSLEKMEKIVAKNKELSWVGWDVRDLKRSESGRTAINGVRVNGVWYLQRIYSVTRNGWDIPNKYRG*