Scaffold Ga0114350_1004304

Overview

Basic Information

• Taxon OID: 3300008116
• Scaffold ID: Ga0114350_1004304
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16475
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (60.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047028	Metagenome	150	N
F080002	Metagenome	115	N
F085646	Metagenome	111	N
F087936	Metagenome	110	Y
F093531	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114350_100430410	F093531	AGGGGG	MYANQAYVGLNYSFRYWTTGTVGVGAALPGVCYMYPSMSQDMAMRMVAIRPRDSFNFLDFGYSIKSVTKTSGTTYAVELSSNFGPPISFFTGEILSDRFAANGTEKTTYNNYVVIGVGNGTTPITPGFAPIFNSIFISLDTNNSWSVIDNETLAAPAGLPTVGDYFTTEMRFGCNCPDYLAREDFNLYEYSLKRKYPYTLPQDLKPGLYDAGKDFLASRTENSRDLPGFTRDFGFLYVKRLLNLPSYTDGSKVYSDPNLIYFAPR*
Ga0114350_100430411	F087936	GGA	MFPPAWLAQPTDEPMDDKYREFFDLNLAKQTTFEKRQQHLRWWEKYSPSKNTVPVHMMYPDMHPTMVKTLNFDTLASGTSTAMTASGFEMFTIDQYDPFAPPDPDVTPKLDGGTYSNGVLVSGASLIYDGGSYANGNLIPYPSLPSLINGGVY*
Ga0114350_100430421	F047028	GGAG	MSDLSRGAAALIKNLFSGNETERMISAGVVRTILSDMTRLYFENRAALGEGILVFNPENPETSKYLTKSDLENDLAVAQEGMDEKAEALFSKIIRVIEKESESDLALIAMVQSSEICVHLVDPKEANKKIDEYSNGLIY*
Ga0114350_100430422	F085646	GGAG	MDITREIKDIRDALNSIEASLQLLVAQKGGKITNAFVSKKIVSQRLNVPAVTIDKLIHQGIASKGESGLVEGRHFCKTDPTERNSSKFLYDIHAITQAAWSNFTYV*
Ga0114350_100430423	F080002	N/A	VITTYTSTAYSANSTAELRRPCLWEDEFKIDNLPTWIYTDNQPPKDTRDCEAKISSLEYTIRDIELQIEIRELELKTGNSRHSSAFDYEKWKVGALKAKQTHYYLLNAYTYWLIKNERRELDSPGKLDKLIELLIEDPSDFETKAKALLN*