Scaffold Ga0114350_1001635

Overview

Basic Information

• Taxon OID: 3300008116
• Scaffold ID: Ga0114350_1001635
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12622
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (95.45%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001396	Metagenome / Metatranscriptome	705	Y
F004761	Metagenome / Metatranscriptome	424	Y
F012663	Metagenome / Metatranscriptome	278	Y
F068612	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114350_100163514	F001396	GGAG	METVLVPIAVAIITGPIVVVLQKLRKENSEQHAEGRVLLRNVAHKVDKIGTKLDEHIGWHKGKEE*
Ga0114350_100163515	F012663	GGA	MQVFVCEPCGKSFEAEELPRRGAVCFGCHVKTIRLGFTYGQEDFHGPTIRERQAKTVADAKVNGYNAEPVGSRWV*
Ga0114350_100163520	F068612	GAGG	MSEPTTFAKVEGGIVTDVHVVTWDFLVANPDRYGDSSLWIECFRDGSGRGYCSKGWLYDAELDKFVPPFVDISEVAE*
Ga0114350_10016356	F004761	GGCGG	MNLADVRTMVRDISDLDTVDLPNSLLDTFVKEAFQRIVALERRWPFFQETYTLNTVVNQRPYTISTIGDIREIISIVETTASGNRFTEIAYDDAEEVWLGNTDVASRPYFWAVWDGQIHLYPKPDNVYPLTVRAYRNPSYTWLTNTATEIDLDNWFHILLAYYALARVYQRQEDNEMAMMYQRSFEEGVAMARRDLMKARSHRPLLLSGGKKYPTMRRWLQTLGATLGS*