Basic Information | |
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Taxon OID | 3300008116 Open in IMG/M |
Scaffold ID | Ga0114350_1001486 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 13333 |
Total Scaffold Genes | 43 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 28 (65.12%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7635 | Long. (o) | -83.3309 | Alt. (m) | Depth (m) | 4 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F023321 | Metagenome / Metatranscriptome | 210 | Y |
F024533 | Metagenome | 205 | Y |
F045622 | Metagenome / Metatranscriptome | 152 | Y |
F053899 | Metagenome | 140 | Y |
F081259 | Metagenome / Metatranscriptome | 114 | Y |
F091391 | Metagenome | 107 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114350_100148612 | F053899 | AGGAG | MSQAEFDIVMNRIKNLTEYEVQVTIPEDFVFDGPVPFDMSISGDTAWVKVIAETLEEAKLRVYDYFEGEYK* |
Ga0114350_100148630 | F045622 | GAG | MKQLLEILPKLLGMMPELIKYIKYIPILMILAGIGYGVVYVVQNYKDPYKCFNNQLFQQKSIDSNVYVFVGDVCVSGDDEKPVQLSEE* |
Ga0114350_10014864 | F081259 | AGGAG | MFNKILEWLTKPQLSDIEYYIASKNPQTTADVEQLIKEFNYKRRLQCF* |
Ga0114350_10014865 | F023321 | AGGAG | MFLNQPQFPSFYSWNDVQRKSEDITIKTIDFNKNVIDLGISYFNDITGKHFTTYTEKALNFNSNVAEDAKKIIKSESKKSQA* |
Ga0114350_10014867 | F024533 | AGAAG | MPIEKTCPRCGTTHRKRGEFCSRSCGNVRVHTEEDKQVRREKLIEYHQTPEGAATRSKSAKITSAMRKGEEWTNIDADEYAVGIPDVTDYAAEYDITWHRAEKW* |
Ga0114350_10014868 | F091391 | N/A | MAEIYTFIPKQKCKVDNTELDRLRAKLLELHNARDVINKEIRYTKDAINLLEKGEK* |
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