 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300008116 Open in IMG/M |
| Scaffold ID | Ga0114350_1001486 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Michigan |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 13333 |
| Total Scaffold Genes | 43 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 28 (65.12%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erie, USA | |||||||
| Coordinates | Lat. (o) | 41.7635 | Long. (o) | -83.3309 | Alt. (m) | Depth (m) | 4 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F023321 | Metagenome / Metatranscriptome | 210 | Y |
| F024533 | Metagenome | 205 | Y |
| F045622 | Metagenome / Metatranscriptome | 152 | Y |
| F053899 | Metagenome | 140 | Y |
| F081259 | Metagenome / Metatranscriptome | 114 | Y |
| F091391 | Metagenome | 107 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114350_100148612 | F053899 | AGGAG | MSQAEFDIVMNRIKNLTEYEVQVTIPEDFVFDGPVPFDMSISGDTAWVKVIAETLEEAKLRVYDYFEGEYK* |
| Ga0114350_100148630 | F045622 | GAG | MKQLLEILPKLLGMMPELIKYIKYIPILMILAGIGYGVVYVVQNYKDPYKCFNNQLFQQKSIDSNVYVFVGDVCVSGDDEKPVQLSEE* |
| Ga0114350_10014864 | F081259 | AGGAG | MFNKILEWLTKPQLSDIEYYIASKNPQTTADVEQLIKEFNYKRRLQCF* |
| Ga0114350_10014865 | F023321 | AGGAG | MFLNQPQFPSFYSWNDVQRKSEDITIKTIDFNKNVIDLGISYFNDITGKHFTTYTEKALNFNSNVAEDAKKIIKSESKKSQA* |
| Ga0114350_10014867 | F024533 | AGAAG | MPIEKTCPRCGTTHRKRGEFCSRSCGNVRVHTEEDKQVRREKLIEYHQTPEGAATRSKSAKITSAMRKGEEWTNIDADEYAVGIPDVTDYAAEYDITWHRAEKW* |
| Ga0114350_10014868 | F091391 | N/A | MAEIYTFIPKQKCKVDNTELDRLRAKLLELHNARDVINKEIRYTKDAINLLEKGEK* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |