Basic Information | |
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Taxon OID | 3300008116 Open in IMG/M |
Scaffold ID | Ga0114350_1000427 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 32039 |
Total Scaffold Genes | 52 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (25.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7635 | Long. (o) | -83.3309 | Alt. (m) | Depth (m) | 4 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F017800 | Metagenome / Metatranscriptome | 238 | Y |
F057105 | Metagenome | 136 | Y |
F066490 | Metagenome | 126 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114350_100042727 | F017800 | N/A | MKTTVLGILTIVTTVSNVGIQVIKGTPPDFAAAFAAVAAGVGLIKAADAKKK* |
Ga0114350_100042742 | F066490 | GGAGG | MSAKKEPKKRGRPAKVAKPIIEDLPQEPLKAMIIGVCHNPTWVRARIDGFSVNVKCPANISKRLIGKQVDVILVTSELEDYYQYLA* |
Ga0114350_10004276 | F057105 | N/A | MNLFDMPEELSPRLQWMEEQEIHTMKTRDNRWVAYKSETSHNYTHDDEIDAVVGLAKKLKIKLWKE* |
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