Scaffold Ga0114350_1000290

Overview

Basic Information

• Taxon OID: 3300008116
• Scaffold ID: Ga0114350_1000290
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39305
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 52 (82.54%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004695	Metagenome	427	Y
F013504	Metagenome	270	Y
F027490	Metagenome / Metatranscriptome	194	Y
F045619	Metagenome / Metatranscriptome	152	Y
F098944	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114350_100029013	F013504	AGGAG	VALKITAVNNTNGQQETQAYARITNFFGTKDQVQVQVEIHATEEARQAGWPSIQQQAHYVNMSDIQGDFIPALYNVLKTFTQYAGSTDV*
Ga0114350_100029016	F045619	AGGAG	MSEGYNWTINSLQVMNTPEPQTVVMSNFTIAKDGQSVNYSVNLLPANPDSFTPFDQITQEQALAWTQAALGPERVTNMETEVDFLIAQAAVPTPQPAPLPWN*
Ga0114350_10002902	F027490	GAG	MSYGTVINGGAQMRKGVTKGINDKLTGHAAENGRRDQIAKAVGNAYTVNTVSSQHTNGVKNSGKFTKPSNTSKNYAL*
Ga0114350_10002906	F004695	AGGA	MLDKQNVIVENLASSSGNRGLTEQVCHEVYVKMVDYLRLTQSKNTYNRFTDYHYLNIPVSNSTEPIRGIDYIQPIVAPGIDYATAVITKCLMPNGKINFEFERFSEMDGDQARQATEMVKYMLNSKNDSYQVIRDWAQDSLLHKNGIVMVSPVRSPVTQYKEVEGTRDQLRVFETLAGDKGLTAKRQNMRKIDVDLQGAMQEAMAPDESMQEPTGDELQDALRNNTIYRAKYKLTGYETSIRVKHVAQHYFVCNPTIPTIQDQDFVGFYDPMTIHECKAQFPFVDLELLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASQGADRYSRVIMLTTAWIRRDIDGDGEEEIVECCFSGSYILYAKEVDFIPLANMCPKPITGNFFGYSLGERLVPLQEYATAIRRAEMSFAMQSSTPRIGVNPEFLDAEEIQRGVSAMFILDRKFDPTKHIFEFQPMQGNLAYVESAMNRFESDKMAMIGMTSPGDTLNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDVIYITWKTLIQYSDDFNIQQLAGTCLKGAPFMDAISIENFEFIDRKMINIDLALGFLSEENRLTRQQMILQAQQQFSQAMMMIPPEVPEMFIKVRRPFEDTLRVLGVKDVDAYLPTMEEAVNIMQAQAAKGPSAEQQETQSKVALNNAKVEESGSVTALNIRKAQDIDTDDMFEALAAKRGKLSSVQVD*
Ga0114350_100029063	F098944	AGG	MFNEIRPEGSTVTSEEIKQKARDYAKAKRAQKKAMKLATGQIEPKAIETVAVVDEFDMSSFTPRSQVKAGRPKSIVNKVTEYGALFNKLNDERTSRGLPPLKTAMEVLIDAMQSDELDIKDKAKIADKLAPFESSRAPIISVEHIQNVTREDEGDADDALNDFMESLRKV*