Scaffold Ga0114347_1020376

Overview

Basic Information

• Taxon OID: 3300008114
• Scaffold ID: Ga0114347_1020376
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3138
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062760	Metagenome	130	N
F063689	Metagenome	129	Y
F066774	Metagenome / Metatranscriptome	126	Y
F104778	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114347_102037610	F066774	N/A	TQDTTMGNLETWVRQLNGELNVEEIAKTKPAPIPDLVAPYSVFLRAYDKVGLCALTNPRRFAKCNVEFVFDGNTRKLKDVRLINQNEA*
Ga0114347_10203762	F062760	AGG	MKHRDWIATKQNLPQLMIYLEELIEDGKTPQVTIKEKADKGRSLEANKFLWGRLYKSISNFTGYLPMEVHLLCGHLFLSEQKTINGIQVPYVRSTTDLTVEEFASYIQSIEVYFSNLGWSME*
Ga0114347_10203766	F063689	N/A	LWAIWPDAWNIFNVRIDIYPMSNCMEVLFRYIVFDDFGEPIIRFRTKHEADCYVLHRPNHKIKRLPPQPKENVFDLITEEPPF*
Ga0114347_10203767	F104778	AGGTGG	METKAWLIEEFNNNNELVWKMISFFEPDSLEWMRDLKGKKHNLVISELGVKNSKKINGIEKKYDSSKFVVGL*