Basic Information | |
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Taxon OID | 3300008114 Open in IMG/M |
Scaffold ID | Ga0114347_1014503 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8052 |
Total Scaffold Genes | 21 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (76.19%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7635 | Long. (o) | -83.3309 | Alt. (m) | Depth (m) | 4 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000684 | Metagenome / Metatranscriptome | 938 | Y |
F005745 | Metagenome / Metatranscriptome | 391 | Y |
F058095 | Metagenome / Metatranscriptome | 135 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114347_101450312 | F000684 | AGGA | MTLGGYTYRVGDLFTTSKAGITGRIEKFVPQTRNVTKVMLRLANNQTRFAMVKTY* |
Ga0114347_101450317 | F058095 | GGAGG | MEYNYVLTTAYDGELFSTLRISDFLEAHEAWAKCSDHGNAKEYATYNLTDPTGKMYTKNFYANGKVSIK* |
Ga0114347_10145033 | F005745 | AGGA | MEIAPTTLDPYLQRQVDHGISGIDVMHGHLKVLMLEAEQELTEAQRIEEENDFSDAMESMERKYWEGQVDALANLYSLTYDLSFAIAAKEATNE* |
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