Scaffold Ga0114347_1002825

Overview

Basic Information

• Taxon OID: 3300008114
• Scaffold ID: Ga0114347_1002825
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12049
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001706	Metagenome / Metatranscriptome	648	Y
F005780	Metagenome / Metatranscriptome	390	Y
F043283	Metagenome / Metatranscriptome	156	Y
F053256	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114347_100282515	F053256	GGA	MENNVQLTPMQSRQMEVDAYSTNIDVYKKLLATLDGNWDADLIALKDLETQEAARQCPMDRLERLAVLQQFEQVNNLLKTEIVERAKAQAILDIL*
Ga0114347_10028252	F001706	AGG	MKHWEHHPVAIDGCFGCKGLGLQMNSGDAKRDISDKKWTSELQAYRDARAQGIQPAGTTMRHIQEAHRASEVLGKAYNADTMPKTKDITPKAATIMKEIGQI*
Ga0114347_10028256	F005780	AGTAGG	MGTKDSVAIAWCDNGMVDGKFMQGVTDVMLKSGVEFASTLRSQGNQIARQRQTVIDYWYDKTDYKWLLWVDSDVVISPEKFKLLWDNKDAEKRPLVTGVYFTTDNPEEPLMVPMPTVYSFVNDGR*
Ga0114347_10028257	F043283	N/A	MMVDKAEIPVYCHTGATVPHMKRFSLDEHYYKAFFGKLKEEPKSKLITPDKKIITPR*