Scaffold Ga0114347_1002097

Overview

Basic Information

• Taxon OID: 3300008114
• Scaffold ID: Ga0114347_1002097
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18432
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (77.78%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F001059	Metagenome / Metatranscriptome	790	Y
F001915	Metagenome / Metatranscriptome	617	Y
F003521	Metagenome / Metatranscriptome	481	Y
F004695	Metagenome	427	Y
F027490	Metagenome / Metatranscriptome	194	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114347_100209711	F000857	AGGAG	MELNLNNEEAKVNEDYYLKGNLEAGIEGVLRKNDQLFNEVKSGTWSQTFKTANLNYKVGAQDGARYVQYEQTNIEEVKQFCKERREFHAVHGTENPFFAGTAHMMQLPKCFAHEISSKWFNNRPWELIKQEKEDKILFYAIVNEYYSDFVCHPSGKIPLPYNPAIPTK*
Ga0114347_100209714	F003521	N/A	MAMNSIVTKIREHFNRRTKGIDAQKGGNPEQRTLVIQNGEVAGRLLRSEDFALMFNLYRFDMLSRLEDSKGDSERIENAYYVAGVRDFITFVEKSEFLAKVANKNVETLTKKE*
Ga0114347_100209715	F004695	GAGG	MLDKQNIVVESLESPPGNKGIEYKVAHEAYLKMVDYLRLTQAKNTLNRMTDYHYLNIPVSNSTEPIRGIDYIAPVVTPGIDYSTAVITKGLMPDGEVNFEFQKFNEADVGSMQAADMVKYFINSKNDAYQIIRDWTQDALLHKNGIVMISPIREPITQYKEVEGTKDQLRSFEIMAAEKGLTTKRQQMRRIDVNLEGVMQETMVPDEMGTSVDMEDAIKANTIYRAKYKMTGYSTNIRIKHVAQHYFVCNPTIPGIQNQDFCGFYQPMTIHEAKQQYPYIELESFAEHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRFSRVVMLTTCWMRRDVDGDGEEETVEICYSGSYILYIKEVDFIPLASMCPKPIVGNFFGYSQGERLVPLQEYKTAINRAEIAFALQASTPRIGVNPEFIDAEEIQRGVSAMFILDRKFDPGKHVFEFAPMQGNLAYIQDAMDRFDADKMAMLGMTNPNDTLNPEVMKDGNSGYKLQLAMGPNQLIQDEMIKNCAIGLKDAIYIVWKTMIQYSDDYNIQQLANACMEGQDFLDAKSMENYDFIDRRMINIDMALGFLSEENRLTRQQLIIQAQTAFAQALTQMSPEVPELFAKLRRPYEDTLYALGVKHCDAYLPTFEEAAKIVQAKAAQGPSPEQQETQSKVDLNKSKVEETAAKTALLYKQAEDIDMDNMYEGIAAKRGKLSAVQID*
Ga0114347_100209718	F001059	AGGA	MATYDIEALKADLPTAKELAQFVYDKTQIALDLVGKPKEDQYHAAKNALEGKKVPSEFLTDENPYVDRRELIPEDELRVLPARSEDLPAEDSQVHYFGATNMPHPDDPQSDKKVAIDFKKYENGVITFQIVAPVEKVAVGSRLNKYGQVQPEKYTWLDPRTPETVLRRADGTLTKEGRGLYTYCVGEKGSGIWPLIDKEVVAIAQKNIANPWA*
Ga0114347_100209722	F027490	GAGG	MYGKVISGGAAMRKGLTKGINDKLAGHAAENERRQTVATAVGNAYKVLTVSSQHTNNVRGGKFTKPSVPSKV*
Ga0114347_100209726	F001915	N/A	MVEMSDSIYGAEIDGVLSRDRAVFRHRLTVATTEQIFNKGREFIAVRRDLEDKLLGFCWFDRGGYTTYSNEEISNAKFHHLDLRLPVKTRVRMINEMIDQHILWAHTWGVPVVCSTSIRGEHDGFMRIHQKRGFTVNGSYAWIRTEKGIACLK*