Scaffold Ga0114347_1001103

Overview

Basic Information

• Taxon OID: 3300008114
• Scaffold ID: Ga0114347_1001103
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28815
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (84.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017819	Metagenome / Metatranscriptome	238	Y
F077027	Metagenome / Metatranscriptome	117	Y
F078264	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114347_100110324	F078264	N/A	MKKRGRPKRSGPKKKDRYDAVRASPSKRPGQRWITVSLPEDAYYMLKELAAFYKVGMGAYMQSLLVPAFDQAYKESLTLQRIANNREKAKDEIQNRDDVPRRTHF*
Ga0114347_100110328	F017819	N/A	MKKRSKYRPRIVLQNPLEFVLSGLKPVRNLPGIYIDVQLRNRTALEQIRKGIATKEDIDMLIGAFNITEALAIMGKGSDWLDEIKQGQDALLDLSRRGVANGMRFIMTAKQWESLKLVMDLHEEQLAHATVYDIEKAHDFVQTIIRQGKARAIVKIQKEAT*
Ga0114347_100110333	F077027	GAG	MNFNLNIHRVKSIRLSAIRSSETNNMVSASRDLVIETEEGDFELTLFSAYVDQDSDQELLEVKV*