Scaffold Ga0114346_1050556

Overview

Basic Information

• Taxon OID: 3300008113
• Scaffold ID: Ga0114346_1050556
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2076
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005299	Metagenome / Metatranscriptome	405	Y
F008359	Metagenome / Metatranscriptome	334	Y
F025025	Metagenome	203	Y
F103233	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114346_10505561	F008359	N/A	MSKSKLNIKSKYSIKKVKRVMRMKSEGFEPTTFEVYKVSGPNKFRKYFVSRKDAKSFIDGYTDTKMTLGIVKNIMNEIKYK*
Ga0114346_10505562	F005299	N/A	MSSIPTHNPHTFDGFDSPLYIWEEKVGYDSANKKMIAKVYKHLWNVMNFVSKPSWTKVIYDMLVEDNKLGKVSLNGYYSTIRTNLKDIGVIQYNGRKGLSKGPHWDRFYSDEDWSWFKTNTNSGGYGIIVK*
Ga0114346_10505564	F103233	N/A	MSKGQTDNELYEALYDMGYDFGEIDTEDFDEDGFAETAVNLGYRWDENKKEWFNK*
Ga0114346_10505565	F025025	N/A	MSKVKVKEIKLGKRGYKAVVKNKKFNFGDGKHIYEVIELSGPKMDKPRIFVDEESVRKYVGALDTEMKMDKLETSLIKNVLSKKEKKELLASSVLEGALVSTKATLDPAYSTYYNGGSLSVETTTANGEDTDK*