Scaffold Ga0114346_1024615

Overview

Basic Information

• Taxon OID: 3300008113
• Scaffold ID: Ga0114346_1024615
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5505
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003750	Metagenome / Metatranscriptome	470	Y
F004476	Metagenome / Metatranscriptome	436	Y
F006220	Metagenome	378	Y
F103250	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114346_10246151	F006220	AGGAG	MKKRKYVEELNLASGTEIMRASRQRPIVFKDKTKYTRKDKHKNR
Ga0114346_102461511	F103250	GGAG	MQKIELITRYGWATAKIGRYTNGHVGIQLFQDGMPLVKISANLPDTDIEPREFHFNSNDAGSMKEEVLNSGHFEDTGKSHQSGWCEYPVFRLKDHVEIVEN*
Ga0114346_102461515	F004476	N/A	MLFSRQGFKTVDTTEEFVKQAIEFGHKDIVLSVVHGNGVIDIVISPTMDAIEADVYHFLNDDTELKYSMPIKTLTDNNLSSLALTSAIHSYLSEAFKIAEIFRSTTRQSTDYAK*
Ga0114346_102461516	F003750	N/A	GGIVAFWQITKHMPKVLYTLLECISVMAMSVICIMPIAMIIEYILGGNIHTTMMFAGCLAGVGLLCGIWMVMVQSSRELQGKKEYQYVIL*