NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0114346_1004320

Scaffold Ga0114346_1004320


Overview

Basic Information
Taxon OID3300008113 Open in IMG/M
Scaffold IDGa0114346_1004320 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15346
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (90.70%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.8271Long. (o)-83.1945Alt. (m)Depth (m)8
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F000808Metagenome / Metatranscriptome882Y
F007263Metagenome / Metatranscriptome354Y
F011487Metagenome / Metatranscriptome290Y
F014250Metagenome / Metatranscriptome264Y
F021757Metagenome217Y
F023106Metagenome / Metatranscriptome211Y
F048982Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0114346_100432012F021757AGGTGGMMTRKDYVAVAEILSSYKDLIADNFTYEDLVEDFSSFFAEDNPNFKFDKFREACMK*
Ga0114346_100432014F007263AGGMIKEYIDETKFYLIKDEMRYCCDESQFKYVCKAHGETMGCYFCEFDYSTDCEEQH*
Ga0114346_100432015F000447GAGGMGYIEIFRFDEQGAGWIDLDSANPTELFNLEVGLLNEGALFTTKEAN*
Ga0114346_100432016F000808AGGAMEYNYSLTIAYDGELVSTTRSADMLEVVNAWNKCVDFGDAKEYATYNLSDPMGKMYTKTFYRSGMVVVK*
Ga0114346_100432021F011487AGGAGMGNLSDEFYDEYYATVCPSCKENAVDAYEEKCTHCLLEEMSATYNEDIALEMSLGLDY*
Ga0114346_100432036F014250GGAMNNLTLAPRLQNLVDLGESGTDILHGELKNLMLEAETELLYWQKVEEDTDYGDAMDSMERKYAEGLLDAYANVYELTYQLAFAISDRRKNLSE*
Ga0114346_100432040F023106GGAMRISRRITEEEKVANKLGNMVSDLRVDLELVGEYLAKSQPYVVYNRLQVIAESAKETKEGTNYANNNI*
Ga0114346_10043205F048982AGGAGGMVSTQLIDVLNTCRKIRNNNHDSGTHYLLGYLWACISEKEKKRIAILFDNDLKEMETK*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.