Basic Information | |
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Taxon OID | 3300008113 Open in IMG/M |
Scaffold ID | Ga0114346_1004320 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 15346 |
Total Scaffold Genes | 43 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 39 (90.70%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 8 (100.00%) |
Associated Families | 8 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.8271 | Long. (o) | -83.1945 | Alt. (m) | Depth (m) | 8 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000447 | Metagenome / Metatranscriptome | 1128 | Y |
F000808 | Metagenome / Metatranscriptome | 882 | Y |
F007263 | Metagenome / Metatranscriptome | 354 | Y |
F011487 | Metagenome / Metatranscriptome | 290 | Y |
F014250 | Metagenome / Metatranscriptome | 264 | Y |
F021757 | Metagenome | 217 | Y |
F023106 | Metagenome / Metatranscriptome | 211 | Y |
F048982 | Metagenome / Metatranscriptome | 147 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114346_100432012 | F021757 | AGGTGG | MMTRKDYVAVAEILSSYKDLIADNFTYEDLVEDFSSFFAEDNPNFKFDKFREACMK* |
Ga0114346_100432014 | F007263 | AGG | MIKEYIDETKFYLIKDEMRYCCDESQFKYVCKAHGETMGCYFCEFDYSTDCEEQH* |
Ga0114346_100432015 | F000447 | GAGG | MGYIEIFRFDEQGAGWIDLDSANPTELFNLEVGLLNEGALFTTKEAN* |
Ga0114346_100432016 | F000808 | AGGA | MEYNYSLTIAYDGELVSTTRSADMLEVVNAWNKCVDFGDAKEYATYNLSDPMGKMYTKTFYRSGMVVVK* |
Ga0114346_100432021 | F011487 | AGGAG | MGNLSDEFYDEYYATVCPSCKENAVDAYEEKCTHCLLEEMSATYNEDIALEMSLGLDY* |
Ga0114346_100432036 | F014250 | GGA | MNNLTLAPRLQNLVDLGESGTDILHGELKNLMLEAETELLYWQKVEEDTDYGDAMDSMERKYAEGLLDAYANVYELTYQLAFAISDRRKNLSE* |
Ga0114346_100432040 | F023106 | GGA | MRISRRITEEEKVANKLGNMVSDLRVDLELVGEYLAKSQPYVVYNRLQVIAESAKETKEGTNYANNNI* |
Ga0114346_10043205 | F048982 | AGGAGG | MVSTQLIDVLNTCRKIRNNNHDSGTHYLLGYLWACISEKEKKRIAILFDNDLKEMETK* |
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