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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300008113 Open in IMG/M |
| Scaffold ID | Ga0114346_1002255 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Michigan |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 13075 |
| Total Scaffold Genes | 27 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (74.07%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erie, USA | |||||||
| Coordinates | Lat. (o) | 41.8271 | Long. (o) | -83.1945 | Alt. (m) | Depth (m) | 8 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012096 | Metagenome | 283 | Y |
| F015062 | Metagenome | 257 | Y |
| F016499 | Metagenome / Metatranscriptome | 246 | Y |
| F058556 | Metagenome | 135 | Y |
| F067259 | Metagenome | 126 | Y |
| F083731 | Metagenome | 112 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114346_100225511 | F067259 | N/A | MKKYTYIDLEDTIYKVWQTSDDLETLYKYHGDAEQPMTEDEVANTLIGLKQLHDMRCWQLMDMMTRVFELNQYCTDPEKLAARDAILKHVNEIKPKKKGSKK* |
| Ga0114346_100225514 | F058556 | AGGAG | MSHFVVEHVYNGYPMFETITGVEDVDLSLFPGFQTFWVCESLEEVIAVENELRRKHNARRS* |
| Ga0114346_100225515 | F015062 | N/A | MRTKTKHKVSAVAPRLSDEDVDPIEQDDIESSSMQVVEGWQPWDLEDIADIRRLITDKMPVKQQFIIEGFLDGLSYHDLAVTEKYWRYHFAKGVEFIKKELGL* |
| Ga0114346_10022553 | F012096 | AGGAGG | MSSWLIGIIGVVYFAVAIDQFIKGGVGTGIMFLGYALGNVGLVIVAK* |
| Ga0114346_10022555 | F016499 | AGGTGG | VAAKKVKFTPEMAKTVLDLGMQGASQKSMYAAINISKATAAKWKQEDPFFAETMDMATTYGQSFWEMMLLANIDNKAFNSRVAEIALRGQYPDDYKDNREIKANIKQEVTVDFNKEIGDLIAALKV* |
| Ga0114346_10022559 | F083731 | AGG | MNLKQLLKHAGVSNNIIKEVERKAKQTTAQMEQEHQEKAMAMTKMMLNDALRYRKEHGSNTPPSKPKKTIIVPNDM* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |