Scaffold Ga0114346_1000296

Overview

Basic Information

• Taxon OID: 3300008113
• Scaffold ID: Ga0114346_1000296
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36368
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (84.48%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F003521	Metagenome / Metatranscriptome	481	Y
F005087	Metagenome / Metatranscriptome	412	Y
F011483	Metagenome	290	Y
F011751	Metagenome / Metatranscriptome	287	Y
F012214	Metagenome	282	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114346_10002961	F011751	N/A	GVRDMIYLVWRTMIQYADDYNIQQLAGVVSKGMPFLDAQSMANFEFIDRKLINIDLALGFLSEENRLTRQQLIVQCQTQFAQAMMQLDPSVPELFAKVRRPYEDTLRVLNVKDVDAYLPTIEEAAKMAQARAQQGPSMDDQEKQSKMALNMASAGEKEANTAFLVKKTEDIDMDNYYEGVAARQGKLSAVQVD*
Ga0114346_100029614	F012214	GAGG	MSDYSRLRTPFTNMSFTPDVPSNALGPNEYNNGLNVEADVRGMKKVNGDQAFLTAIPGNVIFVNGNFRDSATWVYIAATREGKWYMITANGITNITPGFGANPNVALTGYNDDINITSSWVGSVFFINDTLRPPMYFRPTDTEIRIYDTSPDNFVWNYGSGVNATRAAFVRNFCAPNVGNILIAGNLTQDLSSGITVNYPTTVRWSQAFAQTGVPATWEPTLTNIANEQEVPVRGPLIDGFFLGGNFYVCSYWDTVVFSPISYQSTAAPIFGIRLFNQGRGLLNNNCWANTDQNVYGIDSRDIWVFDGSDFNSLGNQKVRNYFFANLNRTYQERLFMVNNTQKYQIEIYYPDLNSNGWCNKMLSWRYDLNVWNAPKDVNNACNACEAPVYNTTSNTFMYATRCVTYGIGNSASSQLRQTGQGNSFNGAAIPALFERNNVVLQTEKGPVPYSCKTYIHRALPEIAGTGKISITLGGANSTAQTPVYGQTGIVDVVTDNPWVTTQQQSVRTVSIKVASNDATDTWNLTAMNWQATVVEDAF*
Ga0114346_10002962	F003521	AGGA	MKSLVKGIREAFNRRTRTEHTYKEASHEQRTLVLQNGECASRLLLNADFALMFNLYRFYLLERLEDNTTDADRISNAHFVAGVRDFIGFVEKQEYLGKIALKRAETNEKKG*
Ga0114346_100029633	F011483	GGAG	MTYDLVKHLKSEIRELRHILQETQIALAQANVILNCRTEPLTDERIYTLYKRSLDWRQLARDIEAEHDIL*
Ga0114346_10002966	F000857	AGGA	MELDKDDTPKINEEYFTKGNLEAGVDGVFRQNDRLFNEVKSGTWSQTFKTANIDYKVGAVDGVRYVQYDQRNVESVRQYCKDRREFYTKMGTTDNPLFAGTFEAMNLPKCFAHEISSKWFNNRPWELIKRDKADKIKFYAIVNQFYSDFVCHPSGKIPLPYNPLIATK*
Ga0114346_10002967	F005087	GAGG	MSLFIQSANALVSRVAQWVGAIPSALTITATSYNSTTDVITVSSDPRPFVYAGDFISNGISNYTYVLEVSSTTITVSDPESIWSTVTYPGATILKMPTQSALEIQASIQLAELKMRVIELPGLRSNPYDPDDPATVTVGADGLAPIPADMNWPILFFQETPAPDTPPEAASFGPWIIYDRVGDREIIRRRMIDQLYVRPFGVPRVIRASFSEVGPNYVFTPNPGEGTVIKAYYIRTFPFLFSPTSDAVNPLVQNNSALASFPEGYMYGTLWAYYDKNKNNEEAQKWDGRFNDAYGKIEDQNFKDKWSGGDRHLTSEFQPRDYRYSFK*