Scaffold Ga0114346_1000060

Overview

Basic Information

• Taxon OID: 3300008113
• Scaffold ID: Ga0114346_1000060
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 93785
• Total Scaffold Genes: 91
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 61 (67.03%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007028	Metagenome / Metatranscriptome	359	Y
F007312	Metagenome / Metatranscriptome	353	Y
F015212	Metagenome / Metatranscriptome	256	Y
F069735	Metagenome	123	N
F095373	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114346_10000604	F015212	GAGG	MATQYPNSLDVFTNPTATDTLNSGSVPHHLQHANINDAVEAMQTVLGLNPAGAHLTIKDRIIAAETSITNQSVLNGLTDVTITSASAGNVLRYNGSEWVNYSETNIVDGGNF*
Ga0114346_100006051	F007312	AGGAG	MATFYVGPRPVLKGQNTAQMVNPYTTMTGKAKGAGTYSYYPLYSTSHILDGAPDNHHVPGTGRHPGNVLLSQIFNGTTLYVHPLSGTFSDGVGYDGARFRPMEYKGLAGSAAFPSGFGHADRVSDYSYNNYIFDGVSSANVFANTGHAPRTDAEGAPASFGSFRPDEYNGLASTKVFTAGYGQAIPTDYDNEYGKNKVQEWRGVPSSRAL*
Ga0114346_100006058	F095373	N/A	MAASKVNYVVLYSGHSQVYGCSSKKIALESPPPEGCSLSDKKILFITFEPDTNQLSVHKVDDEEVQGADIKVKKEKKTEDE*
Ga0114346_100006086	F069735	GGA	MNVQSIEKLNDLLSDFLSPQITEILNAYGSGESSDQYFVNIPESDAIDMTMADLASLVARTSNVYGRVTRFAGMARAHYKICEGKYKKVYKSNRTGKNEAEREANALEAAEEQYTAMITAESIVQLAESMEGAARIASESARKLLDKAQSMQIASYREEKGSYLDSDFSTY*
Ga0114346_100006090	F007028	N/A	MPKINKSAQEESLGSPIEQVVNLVSGEISVSSSPVFICGVNRKVNIGNFENIDIYAGITIPLAGVDPSDKEALNEAVKEAAAYGFSLVSKETGERYMLIKEGQQGK*