Basic Information | |
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Taxon OID | 3300008113 Open in IMG/M |
Scaffold ID | Ga0114346_1000060 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 93785 |
Total Scaffold Genes | 91 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 61 (67.03%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.8271 | Long. (o) | -83.1945 | Alt. (m) | Depth (m) | 8 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F007028 | Metagenome / Metatranscriptome | 359 | Y |
F007312 | Metagenome / Metatranscriptome | 353 | Y |
F015212 | Metagenome / Metatranscriptome | 256 | Y |
F069735 | Metagenome | 123 | N |
F095373 | Metagenome | 105 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114346_10000604 | F015212 | GAGG | MATQYPNSLDVFTNPTATDTLNSGSVPHHLQHANINDAVEAMQTVLGLNPAGAHLTIKDRIIAAETSITNQSVLNGLTDVTITSASAGNVLRYNGSEWVNYSETNIVDGGNF* |
Ga0114346_100006051 | F007312 | AGGAG | MATFYVGPRPVLKGQNTAQMVNPYTTMTGKAKGAGTYSYYPLYSTSHILDGAPDNHHVPGTGRHPGNVLLSQIFNGTTLYVHPLSGTFSDGVGYDGARFRPMEYKGLAGSAAFPSGFGHADRVSDYSYNNYIFDGVSSANVFANTGHAPRTDAEGAPASFGSFRPDEYNGLASTKVFTAGYGQAIPTDYDNEYGKNKVQEWRGVPSSRAL* |
Ga0114346_100006058 | F095373 | N/A | MAASKVNYVVLYSGHSQVYGCSSKKIALESPPPEGCSLSDKKILFITFEPDTNQLSVHKVDDEEVQGADIKVKKEKKTEDE* |
Ga0114346_100006086 | F069735 | GGA | MNVQSIEKLNDLLSDFLSPQITEILNAYGSGESSDQYFVNIPESDAIDMTMADLASLVARTSNVYGRVTRFAGMARAHYKICEGKYKKVYKSNRTGKNEAEREANALEAAEEQYTAMITAESIVQLAESMEGAARIASESARKLLDKAQSMQIASYREEKGSYLDSDFSTY* |
Ga0114346_100006090 | F007028 | N/A | MPKINKSAQEESLGSPIEQVVNLVSGEISVSSSPVFICGVNRKVNIGNFENIDIYAGITIPLAGVDPSDKEALNEAVKEAAAYGFSLVSKETGERYMLIKEGQQGK* |
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