Scaffold Ga0114345_1019134

Overview

Basic Information

• Taxon OID: 3300008112
• Scaffold ID: Ga0114345_1019134
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-100-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1815
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054566	Metagenome / Metatranscriptome	139	N
F055421	Metagenome / Metatranscriptome	138	N
F055422	Metagenome / Metatranscriptome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114345_10191342	F055422	N/A	MNNWRFRRRTFPLTRREAHSRVEAIPIANIDVLLRTIIDVMNEIRPTDDFDAILATRLYYAVMCLKRFFPGWGITMQTHHLRNTSSSNRNGNPPDMNRDSSEIDNYSETEPLITEV*
Ga0114345_10191344	F055421	N/A	MEEFTNPYKEINIETHLVWITIATTANYIPMEGIIGKCIRSYLALVVWLLIILNRKRSLWQRGAILTIYLKLNSTTRIIENLSYSMTVIKIGMLGVSLEQIICNNIIESAKMVVLLHFMTVAICLPSGEEIESNLIKLTTGY*
Ga0114345_10191345	F054566	AGG	MEKEKNKAELTLDKLRLLRVKNTQEKQAISYIILEEDIEPMLRQSLVCNVRLLETIDHLLGLLEGIGIIITKEELTKK*