Scaffold Ga0114345_1016655

Overview

Basic Information

• Taxon OID: 3300008112
• Scaffold ID: Ga0114345_1016655
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-100-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1917
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015585	Metagenome / Metatranscriptome	253	N
F016361	Metagenome / Metatranscriptome	247	Y
F080871	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114345_10166551	F080871	N/A	MSNPQRFSCSRSTIGFNQPKGERLTSSQLWERRNQLTTILIGFINATPNIKGIEVGGEIKRYREFCKIIETIREIDPDYHLVVAPRSEDCLR
Ga0114345_10166552	F016361	N/A	MCKKRELTEEPLINRVRQPINERSIQTLLQKQLAIMALIDTMTITMDPEKGKTVFQEIVSIMKELKDIDAMCTCGSN*
Ga0114345_10166553	F015585	N/A	MTKIRLHLYSKRLCIKYQFEKIKMSQKNTESNQRLIKVINHCSRIAESKEVRELQLSPQLGELIKNLAGKGREWSFILITYPKKSSEVQGKPPSEIKAEPGLSEEEKFFSSPW*