Scaffold Ga0114345_1000389

Overview

Basic Information

• Taxon OID: 3300008112
• Scaffold ID: Ga0114345_1000389
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-100-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10343
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (11.11%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036545	Metagenome / Metatranscriptome	169	N
F046332	Metagenome / Metatranscriptome	151	N
F048095	Metagenome / Metatranscriptome	148	N
F051885	Metagenome / Metatranscriptome	143	N
F059665	Metagenome / Metatranscriptome	133	N
F078638	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114345_100038911	F051885	N/A	MSNSSKGNAPNTSSLATYVNTPLTKEQLREKDKLPLQCIELAINLGVKQLKDFGECVEDLYNLKKRIKTYDPEFKFLDDKNIYIYQLLSRLDSIDSSLSPDKSKNMAICHRTHLENRVIRKNYPSWRVDFGQVLQTLKRNSNSEVHSKVRYILQMDRDRHPVLIPEICKNSRSQGKDFECDCPDCKVSEDIKHLNICSKQKGT*
Ga0114345_100038912	F078638	N/A	LIAKLLALVNFLPLGTEAPNYIIVRKIFAIKKEIHNLYLMWRLTDEFYFQEYGVLSSIDLINTRKPWNTAVNTIRYMDLQRDFTMMRNKFPEWEFTLSDVRRHSTCRCSDCLKQKLLTAKEESLAEAELSSSSSSSLEGLD*
Ga0114345_100038913	F036545	N/A	MSNMTNDTLSHFLKAERKEKLIEPVRTMSSVINMIYFQAPHGEEKNKLLLLRLHEEKAKVLSLDPSWSMNRLIDLLITQMFNRIDNIDINQSWDSGFNLEQFKKLQERMVFFKHLHPNWRLGPRKVAEYSNCTSELCYQVRYPSKEDVLEEIYSLSIS*
Ga0114345_100038917	F059665	N/A	MSDEKGNSRVFTESRVRSNRGRWSDNDLLLFVQSLLNSIDTEENLQTNIKVMKELLETIKDFRECKPNWYFVLEKIPGSNRETAGNE*
Ga0114345_10003893	F048095	N/A	MSQFDRQKSFQDRLNSVQELTIKSIFANSQESRNRGNLYHTSTDCYKQAIRHAENQGRDILRTITINSDVAILTLLYEANIATLENILEISDFTQKSERLKLFYDFLQQIKATEFQGWKDHMICLSSRPESASSTWNKTIAEE*
Ga0114345_10003896	F046332	N/A	MSQSAQPSSSGNKFASVVNQNPLINGLCYERDQLVKRLIGLINEVFIDDRYPGNNLIWVKPMREIAEAIVRLDPSWRLECVTERYKCMVIKHLNCFCDRSIAKAD*