Scaffold Ga0114345_1000085

Overview

Basic Information

• Taxon OID: 3300008112
• Scaffold ID: Ga0114345_1000085
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-100-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30110
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (23.53%)
• Novel Protein Genes: 24
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (12.50%)
• Associated Families: 24

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Branchiopoda → Phyllopoda → Diplostraca → Cladocera → Anomopoda → Daphniidae → Daphnia → Daphnia pulex (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011134	Metagenome / Metatranscriptome	294	N
F016117	Metagenome / Metatranscriptome	249	N
F016243	Metagenome / Metatranscriptome	248	N
F019600	Metagenome / Metatranscriptome	228	N
F019778	Metagenome / Metatranscriptome	227	N
F019949	Metagenome / Metatranscriptome	226	N
F022147	Metagenome / Metatranscriptome	215	N
F022593	Metagenome / Metatranscriptome	213	N
F024962	Metagenome / Metatranscriptome	203	N
F026810	Metagenome / Metatranscriptome	196	N
F027744	Metagenome / Metatranscriptome	193	N
F028416	Metagenome / Metatranscriptome	191	N
F028417	Metagenome / Metatranscriptome	191	N
F030412	Metagenome / Metatranscriptome	185	N
F031767	Metagenome / Metatranscriptome	181	N
F033695	Metagenome / Metatranscriptome	176	N
F045532	Metagenome / Metatranscriptome	152	N
F055419	Metagenome / Metatranscriptome	138	N
F055458	Metagenome / Metatranscriptome	138	N
F073465	Metagenome / Metatranscriptome	120	N
F074379	Metagenome / Metatranscriptome	119	N
F088320	Metagenome / Metatranscriptome	109	N
F100356	Metagenome / Metatranscriptome	102	N
F100445	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114345_100008511	F073465	N/A	MNNWRHRWRQSHHPPRHRAVPPAPRIEAVPIRNIDALLMAVIRAMNAIPPSDDFDTALATRLYYTVMCLKRFFPEWGVYLTPVYSGNRFIPSRVEDQGFSEPENDSETEPLISDV*
Ga0114345_100008513	F011134	N/A	MSTFAKLEENYDSKETLVDTIKTDLVSQFKKCIDDINTEIIVINESNVEQYEKLNEVLISLRRLDPEWNIDSNSDKPWSFKYMLEGILRCRILEIDISDLDTLDMDGYENFHDSLRDLRAEDPGWSINNTRRNFPILLTSEDIGLMNNHLKSKDE*
Ga0114345_100008514	F100356	N/A	MEYRTLKNEIELLENVQRLMNELNIELDFNANYVTLLGLFSAIKRLKTIQPKWIFRVARTPPLEENTFF*
Ga0114345_100008516	F055419	N/A	MVETLAPHERLALYNLTDEEIEKIEKELIKQFPREQFAEIYIEMWQTYKETGALQIHRLIEAKYPGSPRAGRRAITWFKIARLLPHRVHRNARS*
Ga0114345_100008519	F027744	N/A	MNSTVKEKEENSFYEPSINTTSRRINPELPLTIAERDAVARGVVRFNKLRQQKKERLNDLLEALDTRHGTVQDPCNIDTLIEIFNTVRLIKCAFPDKRIVWELPEHRPLPLADSPEVENALIKSALEKKFFQRVNCEKEKELYFNSLKL*
Ga0114345_10000852	F019778	N/A	MSLDTASQTELIFLYIGESRLIKRISNEILLILHEDAKGVNTTKMKESLQFKIRGRLSYLYHLAMSTIREEAMYASALYTQLNNLLAVLSLADKTIAIKLITKVCSAYRSSNEIAQITAQTSNNIEKMEIG*
Ga0114345_100008520	F028416	GAG	MNEQPVNGHAIAHRPERHPNVFRIRRAWLKVAGEALDLLNLIDTTQSSTAADNTLVYEAIYNKIKKLKRIDPDKFINQDTMVQATVIKYDCPNCLPTDSIYRVDYEFDC*
Ga0114345_100008522	F024962	GGA	MNSQALKSKIKEQVESEIDPILKEKYQEDVAVKLFKTSVKIIRDSIDRITECYYIPYPQQEKENFVREIVVHVFEWKSKIQNRSDHEDITGLDHLLSRKIIEVLEEYLIALGEVDADKRQSKLYYVDAFIAVANNRKLEDIIKHPFSIELCKRNNWVVEMPKSN*
Ga0114345_100008525	F028417	N/A	MSKEMATSESLDKKKQLITLMLQTIENFVPSEPRPAPKGMAIYLYELKKEIIKHDPEFKFINSYNDYIFRTLTLLHYLDVSKEYDTEDHGKTIRMICRETRDIRRIDPLWKMDKNSVIEFINSTSSISTK*
Ga0114345_100008526	F019949	N/A	MHPEKNRYSKRTLRFADDSIHNNSTAENETDKENSKNEFEKFVDESLVLQLAFRTFKIEIGEVALLRLIEKLLYTVDKMHNLSPLQKARKSSKIYELKQKIIQINRNWKISDSFHLKKYKVLALIDKISVKEEHNSVANEEVYQQLINEVETASRTNPTWQLSKELIVIKKK*
Ga0114345_100008528	F030412	N/A	MNRPCSKCDKNLFSCEKPEGEHLTPLSLWNRRDNLVRELIESLNLMTITVSRTVGAEMQEHLNMRDLIKKIREIDPEWHLIVAPQRDNCLRIMHYDCNCNFNYRCDCRSRKDLHQNERPTSN*
Ga0114345_100008529	F074379	N/A	MDTLLSHKTELIVQFIDLINAMVHKEYENRYPLWAGKVKEVTTQISNIDSRWGLKLIKTQCKHILIRQSDCTCDPPSNYQSFMMSDLELYILSRSKTPTIDELMRRRRVLVNELIKFIEDCIIDGYYPQYDLTWVVHLRRISQRILDIDPYWKLECVREPFKCLKIKRISCDCSHQK*
Ga0114345_100008533	F026810	N/A	MASNTKMLTEMTKEENIHLFKGGLKMLLCFTDTAIDILKDNMKGIIGLYYGLEPWGRFLQYYLAMFEKTLVLYKTQINAHGYTIAEKLSLPLMKDIGILIDMCKEGRTPHTLHKLQIYKHHIQYLLSKHDSEWTEELMKVHVYSVVNTEFIKIKEKVNEPELVSKLGVVTNQTLVLSPSQSGQSQSSALDLSLPKQQ*
Ga0114345_100008534	F033695	N/A	MEGLNQEFKLAMEEVQELTRRAAMYSSRGNNGPTRMDLKAVQYYRKEVNQRIEYIQEMMEIFPFKTDIFYLWKIHKNTLKLLSMILSTENQRERFQKLNNYGKVLEKFKNETNYFYWKDYIITNENKMLEGS*
Ga0114345_100008535	F031767	N/A	MDNNSTNPQKIIIKKMERKPRQNYIKTLATLKSIVEDTDKLYNQFDSQEQALKKRISGCQDWTRFWTRGGNLSRKEKSLMYYLEDISNRLTRISEMRDLEEKERLLYYLKVEISLETLQNEKYQKKSVSVHENI*
Ga0114345_100008536	F019600	N/A	MYDLSTDTTELIGNNLEESLKIARETVHEGRRAVEELTSAITQLVYEEDRRRKEFAEVLATIQAVLNTVQNKCITVHWRHSEDSTLTSSLKELSKDMLQLTDLVSSSNIEEMKEIIEDLANW*
Ga0114345_100008538	F100445	N/A	MTQIVNEAQAKLIPLAFDLNNRIWMEGYVLCCSFLENAAQILQIQIMDGQGFDTMVEYDIELNTHINQVLNILNQEQSITPDMTVWVMSLLNYMLYLKNIVFNPDPDDLIKFIKPLQIIKLNIKESRVLMEGALTWVDKKMMMQ*
Ga0114345_100008539	F088320	N/A	MSQASENRRRELEDSKRKLTESVMMINGLLSLLESHKRMLSERNQADPSSGKISVAKDAVKVMADKLREVLDLNELQIEEDIVTQ*
Ga0114345_100008540	F055458	N/A	MSILVTDIVNKTMATFIKGSMCELMALICAQQKEIVKELEKFPLAKRILVEDEVDDAHDKIIELLTELELTFLVETETENS*
Ga0114345_100008550	F016117	N/A	MDSIHIELSPRLGLLIAAWRNFFTKLHARSMLTDNGLQYLLALLVDKLQEALDSEFHPLVLDWLKETLPKVIKCRGTVNLVNQIPAHLWASDHIFRRDYFICLERRANQLSAPS*
Ga0114345_10000856	F022147	N/A	MQHKKDEYIFQLVTRAVKEIDSSEICRKREIFKILAEPEVSLEIKQILAKNAMLITELQHYTEEVYNTSQYILAHYFKLERIIKGETPPLQEVIVFHSKRKGIIENKNKATLEKVAIANKLLIKTLSNDIRDALNEQLTILGKVNSTFTNLSLMYTYIENNDSVLQAEAKSRQWSNEYKET*
Ga0114345_10000857	F016243	N/A	MDEAQIAKNVIRLAARPKWPIEARRDKVSQTIAEEVQRSDELNQALMELDILLSKLQEKYQEVDDVCEHLLKHYLKSEYIQLHRPSFYNTTTIEDSKAEFIRRLLEVSENRKSLKVQDSEITMHSIYYKIDPGLRLALNNNIVTLLTIDNELIDLKTMYEYLIENCKND*
Ga0114345_10000858	F022593	N/A	MDKKEELRLFKDKVEQVRKHKLANYQEKRNIADTLLMEDLEVESRVPLTYAHELLERIDLLLGILEGIGELIVKFKEQEMKRNESVLIVLNSI*
Ga0114345_10000859	F045532	AGG	METLDLIEFSNPYRKTSYKAYIFWIGISTVANHAIANTITCIFIRTYLAMIVALILLFNKDKNIVHRLMIYLVYLEINPKNRIIENLNYSVMIIRLGMLSMSLEQIILNPNMELAHAIILVHLIVVAAYLPNYIDTQEVIAKTMSYFI*