NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114345_1000085

Scaffold Ga0114345_1000085


Overview

Basic Information
Taxon OID3300008112 Open in IMG/M
Scaffold IDGa0114345_1000085 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-100-LTR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30110
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (23.53%)
Novel Protein Genes24 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (12.50%)
Associated Families24

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Branchiopoda → Phyllopoda → Diplostraca → Cladocera → Anomopoda → Daphniidae → Daphnia → Daphnia pulex(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.8271Long. (o)-83.1945Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011134Metagenome / Metatranscriptome294N
F016117Metagenome / Metatranscriptome249N
F016243Metagenome / Metatranscriptome248N
F019600Metagenome / Metatranscriptome228N
F019778Metagenome / Metatranscriptome227N
F019949Metagenome / Metatranscriptome226N
F022147Metagenome / Metatranscriptome215N
F022593Metagenome / Metatranscriptome213N
F024962Metagenome / Metatranscriptome203N
F026810Metagenome / Metatranscriptome196N
F027744Metagenome / Metatranscriptome193N
F028416Metagenome / Metatranscriptome191N
F028417Metagenome / Metatranscriptome191N
F030412Metagenome / Metatranscriptome185N
F031767Metagenome / Metatranscriptome181N
F033695Metagenome / Metatranscriptome176N
F045532Metagenome / Metatranscriptome152N
F055419Metagenome / Metatranscriptome138N
F055458Metagenome / Metatranscriptome138N
F073465Metagenome / Metatranscriptome120N
F074379Metagenome / Metatranscriptome119N
F088320Metagenome / Metatranscriptome109N
F100356Metagenome / Metatranscriptome102N
F100445Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0114345_100008511F073465N/AMNNWRHRWRQSHHPPRHRAVPPAPRIEAVPIRNIDALLMAVIRAMNAIPPSDDFDTALATRLYYTVMCLKRFFPEWGVYLTPVYSGNRFIPSRVEDQGFSEPENDSETEPLISDV*
Ga0114345_100008513F011134N/AMSTFAKLEENYDSKETLVDTIKTDLVSQFKKCIDDINTEIIVINESNVEQYEKLNEVLISLRRLDPEWNIDSNSDKPWSFKYMLEGILRCRILEIDISDLDTLDMDGYENFHDSLRDLRAEDPGWSINNTRRNFPILLTSEDIGLMNNHLKSKDE*
Ga0114345_100008514F100356N/AMEYRTLKNEIELLENVQRLMNELNIELDFNANYVTLLGLFSAIKRLKTIQPKWIFRVARTPPLEENTFF*
Ga0114345_100008516F055419N/AMVETLAPHERLALYNLTDEEIEKIEKELIKQFPREQFAEIYIEMWQTYKETGALQIHRLIEAKYPGSPRAGRRAITWFKIARLLPHRVHRNARS*
Ga0114345_100008519F027744N/AMNSTVKEKEENSFYEPSINTTSRRINPELPLTIAERDAVARGVVRFNKLRQQKKERLNDLLEALDTRHGTVQDPCNIDTLIEIFNTVRLIKCAFPDKRIVWELPEHRPLPLADSPEVENALIKSALEKKFFQRVNCEKEKELYFNSLKL*
Ga0114345_10000852F019778N/AMSLDTASQTELIFLYIGESRLIKRISNEILLILHEDAKGVNTTKMKESLQFKIRGRLSYLYHLAMSTIREEAMYASALYTQLNNLLAVLSLADKTIAIKLITKVCSAYRSSNEIAQITAQTSNNIEKMEIG*
Ga0114345_100008520F028416GAGMNEQPVNGHAIAHRPERHPNVFRIRRAWLKVAGEALDLLNLIDTTQSSTAADNTLVYEAIYNKIKKLKRIDPDKFINQDTMVQATVIKYDCPNCLPTDSIYRVDYEFDC*
Ga0114345_100008522F024962GGAMNSQALKSKIKEQVESEIDPILKEKYQEDVAVKLFKTSVKIIRDSIDRITECYYIPYPQQEKENFVREIVVHVFEWKSKIQNRSDHEDITGLDHLLSRKIIEVLEEYLIALGEVDADKRQSKLYYVDAFIAVANNRKLEDIIKHPFSIELCKRNNWVVEMPKSN*
Ga0114345_100008525F028417N/AMSKEMATSESLDKKKQLITLMLQTIENFVPSEPRPAPKGMAIYLYELKKEIIKHDPEFKFINSYNDYIFRTLTLLHYLDVSKEYDTEDHGKTIRMICRETRDIRRIDPLWKMDKNSVIEFINSTSSISTK*
Ga0114345_100008526F019949N/AMHPEKNRYSKRTLRFADDSIHNNSTAENETDKENSKNEFEKFVDESLVLQLAFRTFKIEIGEVALLRLIEKLLYTVDKMHNLSPLQKARKSSKIYELKQKIIQINRNWKISDSFHLKKYKVLALIDKISVKEEHNSVANEEVYQQLINEVETASRTNPTWQLSKELIVIKKK*
Ga0114345_100008528F030412N/AMNRPCSKCDKNLFSCEKPEGEHLTPLSLWNRRDNLVRELIESLNLMTITVSRTVGAEMQEHLNMRDLIKKIREIDPEWHLIVAPQRDNCLRIMHYDCNCNFNYRCDCRSRKDLHQNERPTSN*
Ga0114345_100008529F074379N/AMDTLLSHKTELIVQFIDLINAMVHKEYENRYPLWAGKVKEVTTQISNIDSRWGLKLIKTQCKHILIRQSDCTCDPPSNYQSFMMSDLELYILSRSKTPTIDELMRRRRVLVNELIKFIEDCIIDGYYPQYDLTWVVHLRRISQRILDIDPYWKLECVREPFKCLKIKRISCDCSHQK*
Ga0114345_100008533F026810N/AMASNTKMLTEMTKEENIHLFKGGLKMLLCFTDTAIDILKDNMKGIIGLYYGLEPWGRFLQYYLAMFEKTLVLYKTQINAHGYTIAEKLSLPLMKDIGILIDMCKEGRTPHTLHKLQIYKHHIQYLLSKHDSEWTEELMKVHVYSVVNTEFIKIKEKVNEPELVSKLGVVTNQTLVLSPSQSGQSQSSALDLSLPKQQ*
Ga0114345_100008534F033695N/AMEGLNQEFKLAMEEVQELTRRAAMYSSRGNNGPTRMDLKAVQYYRKEVNQRIEYIQEMMEIFPFKTDIFYLWKIHKNTLKLLSMILSTENQRERFQKLNNYGKVLEKFKNETNYFYWKDYIITNENKMLEGS*
Ga0114345_100008535F031767N/AMDNNSTNPQKIIIKKMERKPRQNYIKTLATLKSIVEDTDKLYNQFDSQEQALKKRISGCQDWTRFWTRGGNLSRKEKSLMYYLEDISNRLTRISEMRDLEEKERLLYYLKVEISLETLQNEKYQKKSVSVHENI*
Ga0114345_100008536F019600N/AMYDLSTDTTELIGNNLEESLKIARETVHEGRRAVEELTSAITQLVYEEDRRRKEFAEVLATIQAVLNTVQNKCITVHWRHSEDSTLTSSLKELSKDMLQLTDLVSSSNIEEMKEIIEDLANW*
Ga0114345_100008538F100445N/AMTQIVNEAQAKLIPLAFDLNNRIWMEGYVLCCSFLENAAQILQIQIMDGQGFDTMVEYDIELNTHINQVLNILNQEQSITPDMTVWVMSLLNYMLYLKNIVFNPDPDDLIKFIKPLQIIKLNIKESRVLMEGALTWVDKKMMMQ*
Ga0114345_100008539F088320N/AMSQASENRRRELEDSKRKLTESVMMINGLLSLLESHKRMLSERNQADPSSGKISVAKDAVKVMADKLREVLDLNELQIEEDIVTQ*
Ga0114345_100008540F055458N/AMSILVTDIVNKTMATFIKGSMCELMALICAQQKEIVKELEKFPLAKRILVEDEVDDAHDKIIELLTELELTFLVETETENS*
Ga0114345_100008550F016117N/AMDSIHIELSPRLGLLIAAWRNFFTKLHARSMLTDNGLQYLLALLVDKLQEALDSEFHPLVLDWLKETLPKVIKCRGTVNLVNQIPAHLWASDHIFRRDYFICLERRANQLSAPS*
Ga0114345_10000856F022147N/AMQHKKDEYIFQLVTRAVKEIDSSEICRKREIFKILAEPEVSLEIKQILAKNAMLITELQHYTEEVYNTSQYILAHYFKLERIIKGETPPLQEVIVFHSKRKGIIENKNKATLEKVAIANKLLIKTLSNDIRDALNEQLTILGKVNSTFTNLSLMYTYIENNDSVLQAEAKSRQWSNEYKET*
Ga0114345_10000857F016243N/AMDEAQIAKNVIRLAARPKWPIEARRDKVSQTIAEEVQRSDELNQALMELDILLSKLQEKYQEVDDVCEHLLKHYLKSEYIQLHRPSFYNTTTIEDSKAEFIRRLLEVSENRKSLKVQDSEITMHSIYYKIDPGLRLALNNNIVTLLTIDNELIDLKTMYEYLIENCKND*
Ga0114345_10000858F022593N/AMDKKEELRLFKDKVEQVRKHKLANYQEKRNIADTLLMEDLEVESRVPLTYAHELLERIDLLLGILEGIGELIVKFKEQEMKRNESVLIVLNSI*
Ga0114345_10000859F045532AGGMETLDLIEFSNPYRKTSYKAYIFWIGISTVANHAIANTITCIFIRTYLAMIVALILLFNKDKNIVHRLMIYLVYLEINPKNRIIENLNYSVMIIRLGMLSMSLEQIILNPNMELAHAIILVHLIVVAAYLPNYIDTQEVIAKTMSYFI*

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