Scaffold Ga0114344

Basic Information
Taxon OID	3300008111 Open in IMG/M
Scaffold ID	Ga0114344_1000412 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-C-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-C-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	26577
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (27.27%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

26577

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (27.27%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.8271	Long. (^o)	-83.1945	Alt. (m)	Depth (m)	8
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.8271

Long. (^o)

-83.1945

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004093	Metagenome	453	Y
F004112	Metagenome / Metatranscriptome	452	Y
F010155	Metagenome / Metatranscriptome	307	Y
F067666	Metagenome / Metatranscriptome	125	N
F079966	Metagenome / Metatranscriptome	115	Y
F101033	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114344_100041211	F010155	N/A	MKDCSNNVRTIYVNALNGNITYNSRNVPVYGQSPFVTPPEQYAIITNITEVADNTNNSFSNIVEVTIEVYSEQNKNNNMGQVDNIANQILNILIPDTQVDGFDDADFEVFPMARTLSTYLPLWEGDNYISRKILTIRNLVNQK*
Ga0114344_100041229	F004093	GAG	MVIYQTIHEIMNPFDVETPLGYGVALFMIAGSIHSNPQFIVRFYHTGELRTIDQNDIKVYGNPTTGEKLKPC*
Ga0114344_10004123	F067666	N/A	MIGELNMKPIKKGDTYVISYSFYEDQCEETPIDVSTYSFKLQAKNTSGTVMIEWLNADFVQINNYTRKVTLTPTTTAGYTAGEYTYELEVTISSNKYTWMQGYVEVQTQVTS*
Ga0114344_10004124	F101033	N/A	MESNFWVVIGFQTIGLAGIGIKIYTDMKVKFREHDLRLKTLEKKEDETVEQFKEIMQALNEIKLQLKDKADRI*
Ga0114344_10004125	F079966	N/A	MADAIKSEGLVIAVTNASGNVYPFACTRNATLSITRDFLELAPRTNGVFREYLPNRQSFSVSGNGLIKLAQSNMQPFTFFDGFIEGTDSEFIGYLDIIDPQGNYKVYKFNCIIQDLAIESTIGNYASYSFTLQGSGPLTEITSVDSYTVSSGKITGRDTATYKLVAVGIEGVWYYNYTVTSPSAGVFEINIGTSFNGKTVKAAYLTL*
Ga0114344_10004128	F004112	GAG	MVKGHEDKRVDEYKQTRMLMFTMVRLMGDPKTAPKTPEALWQLPGDEVEVKIDEEEYRQIFKRLGNG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114344_1000412

Overview

Ecosystem & Geography

Associated Families

Sequences