NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114344_1000152

Scaffold Ga0114344_1000152


Overview

Basic Information
Taxon OID3300008111 Open in IMG/M
Scaffold IDGa0114344_1000152 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)54153
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (79.63%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.8271Long. (o)-83.1945Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F001106Metagenome / Metatranscriptome776Y
F001229Metagenome / Metatranscriptome741Y
F005054Metagenome / Metatranscriptome413Y
F006657Metagenome / Metatranscriptome367Y
F018177Metagenome / Metatranscriptome236Y
F060898Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0114344_100015217F001106AGGAGMSFETLKVAELRKIAEDFAVDTDGIKNKADIIAALAEEGVTWSVYQKTIKDIEEAADEFSEDSEEILPRFDPKAQAEDTVLVRMTRENYRYDILGFTFTKEHPFVAMTEDDAQEIFDKEEGFRLATPKEVQEYYG*
Ga0114344_100015218F005054N/AMAEVLINSQSPVTHKVFWNGDVANADSLPTVALYDVTLDPAVSPAVSPTQLLANLTSSLDENNPGTYSVNIPYQFTDRNKTLRLQWNYAVNGTAVKHSDEVFVITPYVDFNHALDIGFSTDSSDPGYKSYRDLLMAEKYARKIIEQHTSQNFYLKDEVFVVYGDDSDILPLPSRIAELHYLYANDILLVDNIEEINNWNYDVMLSESGYGIRINRASMIDNTVYVANGMIPPSINDHSNGVFQSGVPYRVYGKFGWDKVPDNVELAAIELMKDYFSKDTVWRNKYIQSIQTFDWNFKYSDQSFAGTGNNYADQLLADYVLSKSVVI*
Ga0114344_100015219F001229N/AMNNLIDAVLSMTMDVYRQFDTQDEDTGAIVKEWHYYKSVACHAKGVVSNSSTTRSGDKQIFDNRYTNDQTIQVRTAERITAREKITNIRDSDGNVIWVEINFPTDTPTVFEVMGNTPITDPFGKVVAYNSTMKRSENQVIGQ*
Ga0114344_100015221F000258GGGGGMTDYKADVMLDLRKYLWSELKDNNIFEPTDYYSDNIGQEIVPIIPIQQSPEMNQFLSGKKHIVYDKIGISYEDNWAICCEQILFTIYSTDVSEINEIRNLMTDLFRRMDDSARDTNAYSGISKKFKFFSIFVADISPTAPSEELAGFLSTDIILEVKYARILDSAGRFL*
Ga0114344_100015224F060898AGAAGMPELIQTLKSFKKQKSEDRKFTASLKGIDLDADEEDEVVQGKTFEDIQRQALGIKASGDDIVSLQGSFAAQAGFGIGAGLGYAEE*
Ga0114344_100015248F018177AGAAGMPNINEFLHEPEKVFAPELEKIGGAKPCSKCDKDSEEYFWDAVTMTISWECPDGHKNSYVVG*
Ga0114344_100015254F006657GAGMTLASLKKIQANRVLGIDASTNSIAFCLMENDIPLKWGKIDLVGQDIYEKIYNAKLRMNLMLDELKSDYIAVEGAILVRSPDAVIKLSYVYGVVIAELMSTGSKVITISPS

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