Basic Information | |
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Taxon OID | 3300008111 Open in IMG/M |
Scaffold ID | Ga0114344_1000152 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-C-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 54153 |
Total Scaffold Genes | 54 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 43 (79.63%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.8271 | Long. (o) | -83.1945 | Alt. (m) | Depth (m) | 8 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000258 | Metagenome / Metatranscriptome | 1443 | Y |
F001106 | Metagenome / Metatranscriptome | 776 | Y |
F001229 | Metagenome / Metatranscriptome | 741 | Y |
F005054 | Metagenome / Metatranscriptome | 413 | Y |
F006657 | Metagenome / Metatranscriptome | 367 | Y |
F018177 | Metagenome / Metatranscriptome | 236 | Y |
F060898 | Metagenome / Metatranscriptome | 132 | N |
Protein ID | Family | RBS | Sequence |
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Ga0114344_100015217 | F001106 | AGGAG | MSFETLKVAELRKIAEDFAVDTDGIKNKADIIAALAEEGVTWSVYQKTIKDIEEAADEFSEDSEEILPRFDPKAQAEDTVLVRMTRENYRYDILGFTFTKEHPFVAMTEDDAQEIFDKEEGFRLATPKEVQEYYG* |
Ga0114344_100015218 | F005054 | N/A | MAEVLINSQSPVTHKVFWNGDVANADSLPTVALYDVTLDPAVSPAVSPTQLLANLTSSLDENNPGTYSVNIPYQFTDRNKTLRLQWNYAVNGTAVKHSDEVFVITPYVDFNHALDIGFSTDSSDPGYKSYRDLLMAEKYARKIIEQHTSQNFYLKDEVFVVYGDDSDILPLPSRIAELHYLYANDILLVDNIEEINNWNYDVMLSESGYGIRINRASMIDNTVYVANGMIPPSINDHSNGVFQSGVPYRVYGKFGWDKVPDNVELAAIELMKDYFSKDTVWRNKYIQSIQTFDWNFKYSDQSFAGTGNNYADQLLADYVLSKSVVI* |
Ga0114344_100015219 | F001229 | N/A | MNNLIDAVLSMTMDVYRQFDTQDEDTGAIVKEWHYYKSVACHAKGVVSNSSTTRSGDKQIFDNRYTNDQTIQVRTAERITAREKITNIRDSDGNVIWVEINFPTDTPTVFEVMGNTPITDPFGKVVAYNSTMKRSENQVIGQ* |
Ga0114344_100015221 | F000258 | GGGGG | MTDYKADVMLDLRKYLWSELKDNNIFEPTDYYSDNIGQEIVPIIPIQQSPEMNQFLSGKKHIVYDKIGISYEDNWAICCEQILFTIYSTDVSEINEIRNLMTDLFRRMDDSARDTNAYSGISKKFKFFSIFVADISPTAPSEELAGFLSTDIILEVKYARILDSAGRFL* |
Ga0114344_100015224 | F060898 | AGAAG | MPELIQTLKSFKKQKSEDRKFTASLKGIDLDADEEDEVVQGKTFEDIQRQALGIKASGDDIVSLQGSFAAQAGFGIGAGLGYAEE* |
Ga0114344_100015248 | F018177 | AGAAG | MPNINEFLHEPEKVFAPELEKIGGAKPCSKCDKDSEEYFWDAVTMTISWECPDGHKNSYVVG* |
Ga0114344_100015254 | F006657 | GAG | MTLASLKKIQANRVLGIDASTNSIAFCLMENDIPLKWGKIDLVGQDIYEKIYNAKLRMNLMLDELKSDYIAVEGAILVRSPDAVIKLSYVYGVVIAELMSTGSKVITISPS |
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