Scaffold Ga0114343_1116968

Overview

Basic Information

• Taxon OID: 3300008110
• Scaffold ID: Ga0114343_1116968
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1269
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039139	Metagenome	164	N
F060908	Metagenome / Metatranscriptome	132	Y
F093847	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114343_11169681	F060908	N/A	YTVSETVYIRSKNRIHIPKKYASYIGLHKGFVAHVTNLNGSYIVTACPTPESKKYMVDKDGAVRFNVDKNYYKIMIADNVVVIV*
Ga0114343_11169682	F039139	GGTGG	MSMFLNAFEFTSEDIVTILRAHDTDVTIHQIAEIHDILDHDSITRSALQYNDPDMQLKSALSKAEDLMIMDGLFITEPKRFHVDD*
Ga0114343_11169683	F093847	N/A	LTINLRKTFARIVYFIEQTNNGKSKETILKELELSEEEFQFLLNTMLSISKLKDNEATISSIQIKEEIFIGGIYVTVHNKDLISL*