Scaffold Ga0114343_1013010

Overview

Basic Information

• Taxon OID: 3300008110
• Scaffold ID: Ga0114343_1013010
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3936
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001507	Metagenome / Metatranscriptome	681	Y
F009531	Metagenome / Metatranscriptome	316	Y
F034573	Metagenome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114343_101301014	F034573	AGGAG	MYRISRAVHTSKEEKIAIAIGKVLSDFHLDLEKVGYYLAKATPYLIYRRALEVLESAQFQLDIEEQKKVEYNHDRLF*
Ga0114343_10130102	F009531	N/A	MTLNVEIYEMEYSVSPGGVNCWELNIQGYGTSRCVSDFDTAGEALNWVVDQYPDQMIELVVTSLPAYEKATA*
Ga0114343_10130103	F001507	AGG	MTQTFKPYTVLELVNEIYEDNYSHLEFEENMGGDPCDCHICNTLNTIVKYWGE*