Scaffold Ga0114342_1045352

Overview

Basic Information

• Taxon OID: 3300008109
• Scaffold ID: Ga0114342_1045352
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-53-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1266
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014823	Metagenome / Metatranscriptome	259	N
F021930	Metagenome / Metatranscriptome	216	N
F088321	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114342_10453521	F088321	N/A	MGERVELTPLEYLHGGLAASDKLRVQISNLIKQEFAKSQNLRARMSKIHSSIKVNQTKANRLSEVFKGDEEVLPLVSRYIANLVQLELITACDNIERMYEAMICLEECQIKI*
Ga0114342_10453522	F021930	N/A	MSDQDLRKVTELLREVESEEREKVMEAAEQNLLDSLKSVENITKAIDQLVIKETKRRHDFKDLLTTIKSIVSKSKKETIDGIVEIEKSGNRPSFLAIAEKLAVQLAEIEYIISRQSLEQMEKLMKIVTSEDYEEAREKIDLRPTK*
Ga0114342_10453523	F014823	N/A	MSKKSNKSKDGTPILIDYSLYRDMQEDVREGSQAADELTSVVAQIIYKEIKRRKEFRSLLASVEQTLSTSMRRVHRKVIELRRENSKISKEVLELEFDLERIREVVMSPNLEQMRTLIEDIYDWKVYRQSRSEKEIENLQP