Scaffold Ga0114341_10160133

Overview

Basic Information

• Taxon OID: 3300008108
• Scaffold ID: Ga0114341_10160133
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1298
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039102	Metagenome / Metatranscriptome	164	N
F045559	Metagenome / Metatranscriptome	152	N
F088787	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114341_101601331	F088787	N/A	KGFSIIDDIILYATTFINEANKAKVEKFRGFISDLLDFAKTNITKTLAIVRKLRARSLLSLIPLTKDLIVEQKHIKKLVSSSNLEQVKELLKEYRRTIRRRVSRRYSI*
Ga0114341_101601332	F039102	N/A	MNKDQEKERLIRNLFKAIDNLDSTESKETISQAATRIYHLKREIVKIDPTWRVRDPYNYYVHRVLSLLDGIDTRENPNVHNNQELYLKLFHETKMVRKTNQSWRLNVPKLVEFMTEISKVTHSDKVEPMETEEVSKPSISN*
Ga0114341_101601333	F045559	N/A	MELTFENIKQTTQASGLRKNVAKENYKYVKLTGISNVINSLHSTDFSNEPLMHDRMNRIHVLKWKIKNVDPGWHLTDQVALMEHQILDLLDGIDHMKPWNEVGNKLKYMALFSIIENLRKLHPRWGIHLESLETPEKNHWCKCYKCHEARMQKYKIV