Scaffold Ga0114341_10053452

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114341_10053452

Scaffold Ga0114341_10053452

Overview

Basic Information
Taxon OID	3300008108 Open in IMG/M
Scaffold ID	Ga0114341_10053452 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3512
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7026	Long. (^o)	-83.2538	Alt. (m)		Depth (m)	6
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F071173	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114341_100534523	F071173	GGAG	MITKFGKRFLTSYLSGNNSFSLKELALGIGSTTPNAKGNDTRLDFEFYRLPVELASFDILQNGVDGDGDPVYEYFVTYKSTIPQDVSGVVSEIGLYPGDRQSFNNFDSKFITSFTNEFNWFSGSDNPTSQANTQDSNGAYTFLSKVSDSMIRVDVASGQTKEYINSLISDDISGYSINDTIAIAYKKSDNNVSNIRVKFYSSDLAYYYVDFTPASGTGDKIQELSLSNLFSNYTAAPNLPDPSSIIKIGVATTATGGATTVHFDAIRINDEDTFDPGYGLISRSVLSTPLIKKPGRPVDIEYLLYYTCCRFKNWSTIFF*

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