Scaffold Ga0114341_10001046

Overview

Basic Information

• Taxon OID: 3300008108
• Scaffold ID: Ga0114341_10001046
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42074
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (71.70%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003408	Metagenome / Metatranscriptome	488	Y
F008245	Metagenome / Metatranscriptome	336	N
F023341	Metagenome / Metatranscriptome	210	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114341_100010461	F003408	N/A	LEDSLSMPEMVQTFKSMQKTELEKRTFLASIQGIELNDNSSKNEEGSSFEDVKRRALGINASADDVVSLQGSFASEAGFGIGAGLGYRIE*
Ga0114341_1000104629	F008245	AGG	MTEDRNTLQLISDITEFNDLHDFMKDEHLDKALAIVVKLLMNPDVPSAKAPMLIMELQAMSTKFAVMSSVYSTIAKDKAGTVNNNKKNVYYSVKESIDKLVDALKYVVRYNS*
Ga0114341_1000104653	F023341	AGAAG	VPVYEYKCSEDDAHATMSVHRSIVDNDPGYTCVEC