Basic Information | |
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Taxon OID | 3300008108 Open in IMG/M |
Scaffold ID | Ga0114341_10000563 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 42007 |
Total Scaffold Genes | 72 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 40 (55.56%) |
Novel Protein Genes | 10 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (60.00%) |
Associated Families | 10 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7026 | Long. (o) | -83.2538 | Alt. (m) | Depth (m) | 6 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F001841 | Metagenome / Metatranscriptome | 627 | Y |
F002867 | Metagenome / Metatranscriptome | 524 | Y |
F003805 | Metagenome / Metatranscriptome | 467 | Y |
F004722 | Metagenome | 426 | Y |
F006109 | Metagenome | 381 | Y |
F006785 | Metagenome / Metatranscriptome | 364 | Y |
F010026 | Metagenome / Metatranscriptome | 309 | Y |
F011387 | Metagenome / Metatranscriptome | 291 | Y |
F021513 | Metagenome / Metatranscriptome | 218 | Y |
F022403 | Metagenome / Metatranscriptome | 214 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114341_1000056317 | F021513 | N/A | MNMHILSEHQFQMITQALDEARAALTQCQHVELDLTKPKQTVPLPAGEKITRKAQSQSKTRKSSRGRRGVSSLTEGKVLEIKRQLATGGKSVAKIATEFGVHSTTINNIKFGRTWKSVALQQTAESVG* |
Ga0114341_1000056324 | F004722 | GAG | MSRSRTGRELVMEWLQREIRLAKTADLQRAAAFLEWARAVRKGCSKQRGGARVAQSNAWRKRVDEDVRW* |
Ga0114341_1000056325 | F022403 | AGGAG | MPLRHGQKVYCQLLLDMHRYKLAEELAARDGKKVTGMLREMVYAALEKSLPASDYKAAEAADKASWAESVQRRVQGRMRSKQQPGVSEVDA* |
Ga0114341_1000056326 | F006109 | N/A | LIVTRYVLVTGDRWVTAVYGPGNGVGFTQTKEDASSWVTYECAVAAAKVVMRQVDTPVFVHSVEEPAFPRSWN* |
Ga0114341_1000056328 | F003805 | N/A | MNPLEHSLESQFNKASTDKWLVDRFNSGDYRGLLEAALILNTLHQLEQTKSRWAIREAANNLTERFGLDRDSA* |
Ga0114341_1000056331 | F002867 | GAGG | MPVIRSTLYPSGYALEQLENERGEIFYRACHNSICRYAEDEYIARMYLEGMGWDPKQPPMD* |
Ga0114341_1000056333 | F010026 | N/A | MAVKSKTALGRVEHQLGRPKRTRQGQGQHSRPNHGRKKLRGQGR* |
Ga0114341_100005634 | F001841 | GGA | MGQFTSPNFFLGLLRVAAWLFWRDPVAKSDAPQPKPPRKPTLGYTVAEIPFELLAVIRVAWYRRGKAYEIEEYQIAECPDAQAQFHYIVGGALRQGADVCVLTQYQPEELGVPV* |
Ga0114341_1000056362 | F011387 | GGAG | MAAIANTARDHFSNLIEYTGGTLTAVDDWMEVPAQASSYTFAATVTGGANFQLALECSFNGNGTGNWFTIDSSKTINSNGQYVYFYDGKPAAKIRMRIASISSGTPSIVPHIAVAYHG* |
Ga0114341_1000056372 | F006785 | AGG | MTGGEWTTKGRQREQREQEREQLRLEKRHLRDLRWAIERSTVEASDWQDLLSLQAAHGREGPIQLWRELIPYWRQCQRINGGADIPPDLFPQATGLFPRDSPAAPANRQKPGKGTARKVRSDAGIAKPRRQA* |
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