NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114341_10000563

Scaffold Ga0114341_10000563


Overview

Basic Information
Taxon OID3300008108 Open in IMG/M
Scaffold IDGa0114341_10000563 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)42007
Total Scaffold Genes72 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)40 (55.56%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Associated Families10

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001841Metagenome / Metatranscriptome627Y
F002867Metagenome / Metatranscriptome524Y
F003805Metagenome / Metatranscriptome467Y
F004722Metagenome426Y
F006109Metagenome381Y
F006785Metagenome / Metatranscriptome364Y
F010026Metagenome / Metatranscriptome309Y
F011387Metagenome / Metatranscriptome291Y
F021513Metagenome / Metatranscriptome218Y
F022403Metagenome / Metatranscriptome214Y

Sequences

Protein IDFamilyRBSSequence
Ga0114341_1000056317F021513N/AMNMHILSEHQFQMITQALDEARAALTQCQHVELDLTKPKQTVPLPAGEKITRKAQSQSKTRKSSRGRRGVSSLTEGKVLEIKRQLATGGKSVAKIATEFGVHSTTINNIKFGRTWKSVALQQTAESVG*
Ga0114341_1000056324F004722GAGMSRSRTGRELVMEWLQREIRLAKTADLQRAAAFLEWARAVRKGCSKQRGGARVAQSNAWRKRVDEDVRW*
Ga0114341_1000056325F022403AGGAGMPLRHGQKVYCQLLLDMHRYKLAEELAARDGKKVTGMLREMVYAALEKSLPASDYKAAEAADKASWAESVQRRVQGRMRSKQQPGVSEVDA*
Ga0114341_1000056326F006109N/ALIVTRYVLVTGDRWVTAVYGPGNGVGFTQTKEDASSWVTYECAVAAAKVVMRQVDTPVFVHSVEEPAFPRSWN*
Ga0114341_1000056328F003805N/AMNPLEHSLESQFNKASTDKWLVDRFNSGDYRGLLEAALILNTLHQLEQTKSRWAIREAANNLTERFGLDRDSA*
Ga0114341_1000056331F002867GAGGMPVIRSTLYPSGYALEQLENERGEIFYRACHNSICRYAEDEYIARMYLEGMGWDPKQPPMD*
Ga0114341_1000056333F010026N/AMAVKSKTALGRVEHQLGRPKRTRQGQGQHSRPNHGRKKLRGQGR*
Ga0114341_100005634F001841GGAMGQFTSPNFFLGLLRVAAWLFWRDPVAKSDAPQPKPPRKPTLGYTVAEIPFELLAVIRVAWYRRGKAYEIEEYQIAECPDAQAQFHYIVGGALRQGADVCVLTQYQPEELGVPV*
Ga0114341_1000056362F011387GGAGMAAIANTARDHFSNLIEYTGGTLTAVDDWMEVPAQASSYTFAATVTGGANFQLALECSFNGNGTGNWFTIDSSKTINSNGQYVYFYDGKPAAKIRMRIASISSGTPSIVPHIAVAYHG*
Ga0114341_1000056372F006785AGGMTGGEWTTKGRQREQREQEREQLRLEKRHLRDLRWAIERSTVEASDWQDLLSLQAAHGREGPIQLWRELIPYWRQCQRINGGADIPPDLFPQATGLFPRDSPAAPANRQKPGKGTARKVRSDAGIAKPRRQA*

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