Scaffold Ga0114340_1069420

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1069420
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1487
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F002060	Metagenome / Metatranscriptome	597	Y
F011938	Metagenome / Metatranscriptome	285	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_10694202	F000473	GAGG	MFIDKSNDRLKEHFKYGINEWTGEPNKPVFYTPEMKKAVHQVKKPPMLLMDIVMYPEFLALRLYEDNFLQFEGTKKEMVIDYVTKVKRLLESYGVRCELEGKPSDRVL*
Ga0114340_10694203	F011938	GGAGG	VIEYYDTTYIVFIHSEQCYGAVEKLGAYASTVKYKKEDGTEYSELMENEDFTIMEEIVFKHIEESN*
Ga0114340_10694205	F002060	N/A	MNINYTSIIIAISAAILSGMGTAIIAGLRDNRKEKVRQQEREQDHLKLEIKDLKISLYKIERELTEWKDKYYNAIQELIGVKAELEETLLKLSFIDHHIEDLESLDREF*