NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114340_1035850

Scaffold Ga0114340_1035850


Overview

Basic Information
Taxon OID3300008107 Open in IMG/M
Scaffold IDGa0114340_1035850 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2245
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004051Metagenome / Metatranscriptome455Y
F005177Metagenome / Metatranscriptome409Y
F048990Metagenome / Metatranscriptome147Y
F078406Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
Ga0114340_10358501F048990AGGAMAHNLETNGNEVAFALRGTPAWHNLANRIFSQDEDVSTQTMLDEAKLSNWNVRLSPLTDHISTEW
Ga0114340_10358502F005177N/AMKNRYRVEIYDENKNNDLTIYSEQGVDKEYLTELVFSNLRRFSGNVRAYVYDNLKKKKTTALYLPMEVIPKKTELTKLLG*
Ga0114340_10358505F004051AGGAMTIGNKTYQVGDLFTTLKSKETGVIKEIIPNASGSVRVRLATDNGERWTTISADSLA*
Ga0114340_10358507F078406N/AHNNERKQMIATATALIQATEESIFDEEVMGFAQAFCHHAKDLDTEQFAKSIYIYSTMLASLAVDKAMKVLLNEEQIIDLMNAIDELETMRDEVMNNGE*

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