NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114340_1035333

Scaffold Ga0114340_1035333


Overview

Basic Information
Taxon OID3300008107 Open in IMG/M
Scaffold IDGa0114340_1035333 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3158
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029105Metagenome189Y
F051918Metagenome143Y
F056574Metagenome137Y
F093233Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0114340_103533311F056574AGGAMTFSKVFESIFGSEPKFMARASDPLTSMEAAESIDSTRLEQMVYEVVAKYPNGCTSDEVMAHFPHHGVQTISPRFAPLIRKGFIEDTGEKRKAKSGRSQRVMKIIKQ*
Ga0114340_10353332F093233N/AMHTCPELLGVYLGKIQMRKQIKITEVYLQSEYFNHRLNCTIPAAWIAVFNNGHEVAICREWEASTAEDAQAYYEMHHVEYA*
Ga0114340_10353333F029105AGGAMIDHKLQYYFDDVVSYDNGNTVQNVKVGYDYLPAQHNHPYDYDYAEMFDVFVFDQQGNHITYDIPDAEYKRIMQEAKANFVQIQKDRNEI*
Ga0114340_10353335F051918GAGGMINLLKNYLRLPSAKELAANELEMAHRKLLVALSAQEYAKRMCDYHSDRIKRLTAYLKDET*

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