Basic Information | |
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Taxon OID | 3300008107 Open in IMG/M |
Scaffold ID | Ga0114340_1029509 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6842 |
Total Scaffold Genes | 23 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (73.91%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7635 | Long. (o) | -83.3309 | Alt. (m) | Depth (m) | 4.9 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000447 | Metagenome / Metatranscriptome | 1128 | Y |
F000808 | Metagenome / Metatranscriptome | 882 | Y |
F002515 | Metagenome / Metatranscriptome | 552 | Y |
F024314 | Metagenome / Metatranscriptome | 206 | Y |
F039631 | Metagenome / Metatranscriptome | 163 | Y |
F048982 | Metagenome / Metatranscriptome | 147 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114340_102950910 | F039631 | AGGTGG | MTTLDQNYIKSSAYGHMTLNQRIALAAEKVANGEPVNFRGASVTTYAKVMRLANRIKQEREFPQCPCGECD* |
Ga0114340_102950917 | F000447 | GAG | MGYIEIFRLDETGAGWVNLDNATPDELFNLEVGLLNEGALFTTKEND* |
Ga0114340_102950918 | F000808 | AGGAG | MEYNYSLTTSYDGVLVSTLRSADMIEVVDAWHRCKDFGDAKEYATYNITDPWGKMVTKTFYRDGRVTGK* |
Ga0114340_102950922 | F002515 | N/A | MKKNAEELRRLMELRRSNAASAVPNKKKYNRKKCQSELIQLKYQQKGE* |
Ga0114340_10295093 | F024314 | N/A | MNEEQKLTPEQAQAILLFQIEQKLREHIANQVEEKFHGTYHNESHEIAQFIRNMA* |
Ga0114340_10295097 | F048982 | AGGA | MISIELQDVLATTRKIRNNDRDSGTHYLLGYLWANTPDKEKERIAKLFAKDLEMENNK* |
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