Scaffold Ga0114340_1028242

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114340_1028242

Scaffold Ga0114340_1028242

Overview

Basic Information
Taxon OID	3300008107 Open in IMG/M
Scaffold ID	Ga0114340_1028242 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5336
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (15.38%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7635	Long. (^o)	-83.3309	Alt. (m)		Depth (m)	4.9
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F034181	Metagenome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_102824213	F034181	N/A	GCNLLNAGADVEQLIIVKEKGISNAINVGLNKIDFSNIEYVTILANDILEPNNWLTIRNEFLQDKSIGICSIPLDGFSGDSLDLIGNFTITKEAIKRVGAFNQELDPYGAIDLDYCTRVRAAGLHTKFVPSIKATHLEQNGTDKYGYNKMDLVKKTWDLHNQNVSAYTDGTKAYYIPL*

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