Scaffold Ga0114340_1014077

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1014077
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3867
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007310	Metagenome	353	Y
F010398	Metagenome	304	Y
F013084	Metagenome	274	Y
F018927	Metagenome	232	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_10140774	F007310	N/A	MRTVLWNDTERWFNHHHYELLIEDITGFDLKQSLCAESVKYMAKRLKDTPYSRTFRSKYSIYQDEYKTLVEKFNNQADNNGKIEVA*
Ga0114340_10140775	F013084	N/A	MGIFSVLELMQETKEAVLARGHNVKNWLVLGNDCYALECADCKMTCMVKEKPQPNEIKASGEALAMNCVKPVKEKKLRKK*
Ga0114340_10140776	F018927	AGG	MNKHIEITRHLTVDGTTTYYVVEKSKNASSIIWNGTCKQAAYQVAYRNARKENTPLYDTLYKAQFDRNGVKHIIPIGNELLGVNN*
Ga0114340_10140778	F010398	AGGAG	MEISIQGVTKVNYELVIDENTFNDACEECGLDPANFKKFTKDDWDVLNPHLVQVVVDNEADIDYTEIHVESSVFADTLTIDDSDNMTTVYYDKNRKTDSFEIM*