Scaffold Ga0114340_1012084

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1012084
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5583
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040539	Metagenome	161	Y
F048854	Metagenome	147	Y
F050233	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_101208412	F040539	AGGA	MKWLKTYLREITGETYTFVGLLIAYFTLDGSAKKITGLIIVIGALVWLVTLPLRQDDED*
Ga0114340_10120843	F048854	AGGA	METPTKENKDNLIALRLNNEQMLAVRQWAYQHDTNISTVIRSAIELMTGAKQ*
Ga0114340_10120849	F050233	GGTGG	MWILTAGQYAAAISAIALLTGMAIKWGIVKPIKAYIDQMTYAIQPHANGGKSLPDVAQTVNRIESRIGDIDHRLNAIEELVTKPTRVKKTQN*