Scaffold Ga0114340_1009765

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1009765
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4810
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010397	Metagenome / Metatranscriptome	304	Y
F023346	Metagenome / Metatranscriptome	210	Y
F079812	Metagenome / Metatranscriptome	115	N
F091907	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100976510	F023346	N/A	MNNTISKNIILTYAKALRTIQKEQIDPYINLIEKELIKLYPELEDREDNALNWAYDILNAESNTEVVETLTRLNEIISNERKEKWTCSYCGKNTYNDDVEYLFGTNHIGCALEEDIKNREHSDPDYILDARLQKISDIERKLDIYESELNKLHAELVHLRSDYHHEPTN*
Ga0114340_100976513	F010397	AGGA	MNVNEFERTKPVVTMQKLNELIKLIDDERVKTEILYRDRVRSLEDISILLKETKKSFMKGE*
Ga0114340_10097655	F091907	N/A	MNKNKTGRKATAVNEITDRNFTIVDLININANVKAPTIRMHVKRNVTAGRYKISGSQKTGKRGKPSIVYTYDATPAVEATTTTAESSQTSAN*
Ga0114340_10097656	F079812	GAG	MDGKNVRIGYVKDSGNVVYAHGPNGENVGYYSKSSDTTFDRNGKRYGFGDLTNALVFESARKI*