Basic Information | |
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Taxon OID | 3300008107 Open in IMG/M |
Scaffold ID | Ga0114340_1009765 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4810 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (33.33%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7635 | Long. (o) | -83.3309 | Alt. (m) | Depth (m) | 4.9 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F010397 | Metagenome / Metatranscriptome | 304 | Y |
F023346 | Metagenome / Metatranscriptome | 210 | Y |
F079812 | Metagenome / Metatranscriptome | 115 | N |
F091907 | Metagenome / Metatranscriptome | 107 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114340_100976510 | F023346 | N/A | MNNTISKNIILTYAKALRTIQKEQIDPYINLIEKELIKLYPELEDREDNALNWAYDILNAESNTEVVETLTRLNEIISNERKEKWTCSYCGKNTYNDDVEYLFGTNHIGCALEEDIKNREHSDPDYILDARLQKISDIERKLDIYESELNKLHAELVHLRSDYHHEPTN* |
Ga0114340_100976513 | F010397 | AGGA | MNVNEFERTKPVVTMQKLNELIKLIDDERVKTEILYRDRVRSLEDISILLKETKKSFMKGE* |
Ga0114340_10097655 | F091907 | N/A | MNKNKTGRKATAVNEITDRNFTIVDLININANVKAPTIRMHVKRNVTAGRYKISGSQKTGKRGKPSIVYTYDATPAVEATTTTAESSQTSAN* |
Ga0114340_10097656 | F079812 | GAG | MDGKNVRIGYVKDSGNVVYAHGPNGENVGYYSKSSDTTFDRNGKRYGFGDLTNALVFESARKI* |
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