Scaffold Ga0114340_1009580

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1009580
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4870
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (23.08%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008491	Metagenome / Metatranscriptome	332	Y
F066717	Metagenome / Metatranscriptome	126	Y
F073457	Metagenome / Metatranscriptome	120	Y
F103132	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_10095801	F073457	N/A	MSKFNIEFKESVKTGGNRLGQLIENPFRNFSASKMSIGRKTMCIVEYTDMFGKKHIIKCNNRKQMTEAQLFLSIFKSESAKVKNIISEYPISFGRIPKRFMSELRSELKEFGLSYQFINKLAGY*
Ga0114340_100958011	F103132	N/A	MEEAIKILEHNEVVLMKKIKGLKDGKPKYAASEKLRELRDAINILRAHNEMDVYMSENEDAILIEQFTQHPPQAKA*
Ga0114340_10095806	F066717	N/A	MSKKNKTLKGLKRGYVATLKTKIFDFGEGRHKYEVYELAGDKMDKPRFFVDEDSVRMFINANESETQLVKSFESAVKRAASKSERKEMQAAKELSELVPDLETIVDANIRDSKAKRPEDTDK*
Ga0114340_10095808	F008491	N/A	MAKKIKSKVEYQVTELVNNLNEAASTTSEQKRDFYTTRALYNAKRLSTIVNKAKIGAMAIAITFGMVACGSNASSTEQTAQDSVVVVTDTTAQPVDTTVSTGGGHNADAIK*