Basic Information | |
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Taxon OID | 3300008107 Open in IMG/M |
Scaffold ID | Ga0114340_1009385 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4929 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (11.11%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7635 | Long. (o) | -83.3309 | Alt. (m) | Depth (m) | 4.9 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F004696 | Metagenome | 427 | Y |
F032282 | Metagenome | 180 | Y |
F059972 | Metagenome | 133 | Y |
F076068 | Metagenome | 118 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114340_10093854 | F004696 | N/A | MEYAIKKLKQDEVVLMKKIKSLQDGKPKWAASAQLDEIRSAIKLLERYENITEQDIEDEDEYLKQVFESMPAKAQA* |
Ga0114340_10093855 | F032282 | N/A | MSNSSSIVHSIHSIDIEKYDSIEREREKVLADEEFQMWCKQYNIGSRVEVKDFRANELMQQYTNYPKWVARMF* |
Ga0114340_10093856 | F059972 | N/A | MKLKELLLQMYEGHCERLPDETDEDYLQRCGNSMFSQNYTATQLSNIPNVMKHKLVVPIKTK* |
Ga0114340_10093857 | F076068 | N/A | MLKESVYANAAENFGTPVGVAHIIGYKNKKQQIEEEGIESFNSIEGELQINAIISDAIELELYQQLQRAIYRLKCNKRIKKETTIYNKAWKEITNNENYITKSGQIF* |
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