Scaffold Ga0114340_1007757

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1007757
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7651
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (85.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001176	Metagenome / Metatranscriptome	756	Y
F011938	Metagenome / Metatranscriptome	285	Y
F013891	Metagenome / Metatranscriptome	267	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100775719	F001176	GAG	MNNGTGMDTPPNNQPSGAVTSQEAGRKNPSQGKFKSGIGKPAVKIDRNKHGIRRETSLVPKKTGRPKKV*
Ga0114340_10077573	F013891	N/A	LRLYEDNFIQFDGTKKERVIDYVTKVKKLIESYGVRCELEGVPSERVL*
Ga0114340_10077574	F011938	AGGGGG	VKEYYDIIHIVFIHSENCYGTVEKLGAFASMVKYTIDGEQIEELLENEDFTIVDEIVHQHIEESN*