Basic Information | |
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Taxon OID | 3300008107 Open in IMG/M |
Scaffold ID | Ga0114340_1006224 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6276 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (6.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7635 | Long. (o) | -83.3309 | Alt. (m) | Depth (m) | 4.9 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004837 | Metagenome / Metatranscriptome | 421 | Y |
F012449 | Metagenome / Metatranscriptome | 280 | Y |
F046907 | Metagenome | 150 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114340_100622410 | F004837 | N/A | MTQDEYLLATKHRHYWDQYQAALFMRLSPEAVHDLQTILVAHGRPNTNWWCADCVKSALSYIYQEADQFAEANQQTVNYALTNPESPRAEG* |
Ga0114340_10062245 | F046907 | N/A | MPKDGEPVLITDIEGLQIVAWYSVSNNMWYSENHSWFTSEVNYWMPIPEIEVKVVRSIETL* |
Ga0114340_10062249 | F012449 | AGG | MDTLIFPLLISSLTALAIAEYHVLPQAWYKTWFARHKPFSCVTCLTFWVAVALTLPTCGWVLAPVYGLASAGLTVVILQVTNR* |
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