Scaffold Ga0114340_1004711

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1004711
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12726
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (35.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008613	Metagenome / Metatranscriptome	330	Y
F016151	Metagenome / Metatranscriptome	249	Y
F017288	Metagenome / Metatranscriptome	241	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_10047111	F008613	N/A	LALHHMKSELSNIEKVMDVWLEQGMPDYQTFYNYIFTTFDYELAEQCRGMISRICDAKKEVDLIVSGMNDFVNNRLKTLPTRKLQAEQVISAYGNTNRASFLFKLLDGKLLGKEEYKKLLFQVLKN*
Ga0114340_10047112	F017288	AGGA	MADNNKTPYELRWEILKEMISITKDEWYTKKELAQYNSEKSGKSLEYIGDIPLNDALQRAENVYTSFICKK*
Ga0114340_10047115	F016151	N/A	MTKTQLRQLIKECLCEIDFAPGFRPTHDLTIVSTVTGSDVDDLKKYLLELPKVLKANFGDDVQFEEKLNMSILPNGDKKIETTFTIIDIIDDLMSKTVKENLELIYKELKMWSKNLAINFTFTIKK*