Basic Information | |
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Taxon OID | 3300008107 Open in IMG/M |
Scaffold ID | Ga0114340_1003948 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 9543 |
Total Scaffold Genes | 22 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (27.27%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7635 | Long. (o) | -83.3309 | Alt. (m) | Depth (m) | 4.9 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F009003 | Metagenome / Metatranscriptome | 324 | Y |
F027408 | Metagenome | 194 | N |
F036096 | Metagenome | 170 | Y |
F043894 | Metagenome | 155 | N |
Protein ID | Family | RBS | Sequence |
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Ga0114340_100394814 | F027408 | N/A | MKYDQQKEVELLRKLFVLTAKRSMRPSMTDNMAMRLIFEELHLLTDKDEYKL* |
Ga0114340_100394822 | F043894 | N/A | NGLIAKTVGSNAALLRAMRKSSTPISDRTLYNWLYDAKTIKLQQLINLSKAMDVPVCELIKSITIKNEGDE* |
Ga0114340_10039483 | F036096 | N/A | MKATLTFDLKHNQHEFDCAVNGMKYHDTLYEVQQHLRSLEKYQDLTQEQYDIVGKIREWLASELLDAGIADKF* |
Ga0114340_10039485 | F009003 | AGAAG | MKAKDKAWQLYSNYFDIVEGESQQGQLAQVHFKAINCALYCVDEALANAPDDIVNDFEGTGEYYSVKAYYMHVKRKKKQQSVDCTLYLNVSLKVRPYK* |
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