Scaffold Ga0114340_1003791

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1003791
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13449
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (84.62%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008607	Metagenome	330	Y
F024770	Metagenome / Metatranscriptome	204	Y
F043899	Metagenome	155	Y
F053995	Metagenome / Metatranscriptome	140	N
F101268	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_10037911	F043899	GGA	MNLDDALENLLKTTENNTTQPMESRKRSAEWTPGVSWDGNEGVVTTEPMVGDSHPDWSGVLRIWGLDPDNFAVVEPVLFNVWGNAEGALNRQWKGKVVRKGAKERADIDHLIQEIRKHKPRERKPL
Ga0114340_100379118	F024770	GGA	MAITHERVSVGTTATQISSNYAGKDGQTVNVQNPSGGATVYLGGEGVTTTSYGFLLAAGISFSVEMQDGEKLYGVVASSTQTVNVLRQGA*
Ga0114340_100379120	F053995	AGGA	MPQVNRISRGEVSVGAIQGSTGDMVYGLDFGTASVDPASINATTRGSVTFTLTGAKTTDIIIVNPPADLNDDLIFCGAAVTAADTVSIYLYNPTGSAINDTARTFSYVWIDMTA*
Ga0114340_100379123	F101268	GAGG	MEYMKSAPESVVKMIEDFKKQAETATEELRKEREAKADAEAIEKAKGFSNLNLDAEKVGPALRRLSTVDADLAKSVEEILTSVNAQAESANIFAEIGKSADFTTGDAYSRLTALAKSAVEEGNAKSFEQAFASAASSNPELYVQYRNEKGA*
Ga0114340_10037915	F008607	AGTAGG	MADAIYNKVAEFMTDTVVFTPKASVDKYNKVTFGASNTNVSATGRLVYDTVRSRDVQGVEVVDIGRFITKGPQTTITVSHRMVVGNDTFTINAVDNIADENGAHHTVIRFGR*