Scaffold Ga0114340_1002718

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1002718
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11458
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (62.96%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006622	Metagenome	368	Y
F012435	Metagenome / Metatranscriptome	280	Y
F017968	Metagenome	237	Y
F029755	Metagenome	187	Y
F065786	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100271814	F029755	GAGG	MTEFKLHYYFDDVVSYDNGATLENVKVGYDYHPVLTNYPHAPDYAEIYDVFIFNLKGDDISCDLPLSEFQHIMSETKIHHARMLKEQNEI*
Ga0114340_100271820	F065786	AGGAG	MTKDDLISLLRMTGAQEASIDAVCAAYDAGWNDALDDYAKRLVALPFEKDTIDSFGSFIKSTKK*
Ga0114340_100271823	F006622	AGG	VNEYQKQADKFFKIFARLYVAYLVIGLLPHLPDELAGKIVNKLLGMIGL*
Ga0114340_100271825	F012435	N/A	MSDIDLVKYGVLWQKVESMEAKIDKMETQLETLIELANKGRGGFWMGMVFVSGISTFFGYVSHYWSK*
Ga0114340_10027186	F017968	N/A	MKQTEFLTEPEKGNNLASLSFSERLNLRETMRESEAREWIRRFKKKALEEGRGEAQYWWQQTLLDIAKKRGQPAADDLRKRMNEQKDKK*