Basic Information | |
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Taxon OID | 3300008107 Open in IMG/M |
Scaffold ID | Ga0114340_1001757 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 14250 |
Total Scaffold Genes | 36 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (36.11%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7635 | Long. (o) | -83.3309 | Alt. (m) | Depth (m) | 4.9 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F002909 | Metagenome | 521 | Y |
F011078 | Metagenome / Metatranscriptome | 295 | N |
F033349 | Metagenome / Metatranscriptome | 177 | N |
F037638 | Metagenome / Metatranscriptome | 167 | N |
F039104 | Metagenome / Metatranscriptome | 164 | Y |
F059763 | Metagenome / Metatranscriptome | 133 | N |
Protein ID | Family | RBS | Sequence |
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Ga0114340_100175720 | F039104 | N/A | MKAIVIRASINFITKWRVYFAGELLATFENESDAQDYADFINAQGL* |
Ga0114340_100175725 | F033349 | AGGAGG | MIEATINGWILTLGKDDKYVYTDKQVDDYLMNNHFDELEPYMIKKDVYFGGCVETNLVGIESERFFYLEPDKFTIIFMLGHKTNFL* |
Ga0114340_100175727 | F002909 | N/A | VAEIDLSKLGDALDTFLGDGGNDDLLNQIIENWWNQKVYPEIARSMDSKGVNASSALKQSFVPGEIIKTPTSVNTILLAEDYWEFVEYGRKPTRNDHIEGTPYLWQSIKEWMSYKGIKPTQDQTYDSLAKAIARKIHRRGTKATHFLSDAFTESLQMELVNELNARLGDLIFAVEVKS* |
Ga0114340_10017576 | F037638 | N/A | MTNIEFILSLQPLYDNWKKTQVFNPTPEQGAILNNVHREIFGRNLPNCSTCITEALHSLLIWANQQQEAITKAQLADDEQKPRRRRKNEQ* |
Ga0114340_10017577 | F059763 | AGGA | MYTEIIGIACLSIIIVNFGKPADILKRLIYGKDFSNWKRMKPLDCAFCLSWWMGVVYFVHTYGLIGILYASISTVIVALLETKI* |
Ga0114340_10017578 | F011078 | N/A | LKKADIILELSKADWLTQATRNIAKDNELARELYQFYFLTVLEKPDEQIEKIYADGYIQFWTIRLLYLAINGNRHPFGNSRIYDQYDVYELDIAEEDDLLLEREETEQIELNRINKINQVTESAYFYERELFKLWCSGMSARAIHRQTDISVREVLRVIKIMKERCIQK* |
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