 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300008107 Open in IMG/M |
| Scaffold ID | Ga0114340_1001514 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Michigan |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 25368 |
| Total Scaffold Genes | 57 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 44 (77.19%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erie, USA | |||||||
| Coordinates | Lat. (o) | 41.7635 | Long. (o) | -83.3309 | Alt. (m) | Depth (m) | 4.9 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006019 | Metagenome / Metatranscriptome | 383 | Y |
| F012116 | Metagenome | 283 | Y |
| F036100 | Metagenome | 170 | Y |
| F051928 | Metagenome | 143 | Y |
| F068573 | Metagenome | 124 | Y |
| F071000 | Metagenome | 122 | Y |
| F083892 | Metagenome / Metatranscriptome | 112 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114340_100151419 | F068573 | GAGG | MDFKPLTQEQIIDAYSKVFPTRYEPMTIDRMIQFARIIEQLHGVRYET* |
| Ga0114340_100151420 | F012116 | GGTGG | MKPLAWLVEEFDGNGALVWSGIMTSEPKEMSWFKDIKSKLHNVTITPLIPDTKNIVKVTNVKKYDSKRLTEANNGL* |
| Ga0114340_100151432 | F051928 | AGGAG | MKKLTDYQIRKQWRIKLHAKRCDDNDQSTERYKRDAKVLNRCMSIYKVEGTRATWGQ* |
| Ga0114340_100151435 | F036100 | GGAG | MNFTHAVVDDGEIIRKHRWSKREAKWYKDTHPDVQVIELPKEPVKPFNTNDYEEAPF* |
| Ga0114340_100151445 | F083892 | AGG | MNEKDITAKFFDIGYQSGLNALEYISNYNEKRFLNENPHHDQLAGLLSSIMNCIYYYAPSEKAASELVQFAVDFAKDENAKIGMNLPKGA* |
| Ga0114340_10015147 | F006019 | N/A | MTFITENNIANLYSALIEFPVFDEYKFPPASKVDFVVNNDPEIYGEYSPPEHGDPHTITISTAKCGHLDTVIKTLMHELIHMAIYIEYPNTERYVKHAGLFKKLQKRVATKYGYDPKEL* |
| Ga0114340_10015149 | F071000 | N/A | MNFIGLSFLKLIIVTLLFIAMGFSLAFMIAMEQLTYALEYINSYVD* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |