Basic Information | |
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Taxon OID | 3300008107 Open in IMG/M |
Scaffold ID | Ga0114340_1001419 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 18886 |
Total Scaffold Genes | 38 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (52.63%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
Associated Families | 7 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7635 | Long. (o) | -83.3309 | Alt. (m) | Depth (m) | 4.9 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001841 | Metagenome / Metatranscriptome | 627 | Y |
F003805 | Metagenome / Metatranscriptome | 467 | Y |
F004722 | Metagenome | 426 | Y |
F006109 | Metagenome | 381 | Y |
F006785 | Metagenome / Metatranscriptome | 364 | Y |
F022402 | Metagenome / Metatranscriptome | 214 | Y |
F100424 | Metagenome | 102 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114340_100141914 | F001841 | AGG | MRVAAWLIWREPVAKPEPAPPKRPRKPTLGYNVGDIPFELMAVVRIAWYRKGMTYEVEEYQIEECPDAHAQFHYIVGTALKQGADVCVLTQYKPEDLGVPT* |
Ga0114340_100141925 | F004722 | N/A | MSPARTGRELVMEWLVREVRQAKTADLHRAAAFLEWARGIRKGCSKQRSGARAAQSNAWRKKVDDDVRWGV* |
Ga0114340_100141927 | F006109 | N/A | MTRYVVMAGDRWITAVYGPGNGIGYTRTKEDASTWVTYERAVAAARVVAQCTDSPVAIHSIEEPNYPKSWK* |
Ga0114340_100141930 | F003805 | N/A | MRPIEHSTESSFHKAATDQWLIDRFNSGDYRGLLEAALILNTLHQLEKTKATWAIREAAENLGEQFGLDRDSA* |
Ga0114340_100141937 | F022402 | AGG | MPAWLWRSIVATSMAIVVVATTQWASCRFYTLPKIVWPWYAKWVGTPQGRMIDPAPMGCTDTDTRTITVLMGVLTTLISLSRKAE* |
Ga0114340_10014195 | F100424 | AGG | MPTYGNRPLGPLQRNWLNFLRHNPGPHFVAMPQRDQRIAESLQARGLITMAPATITDLKGLPVFVVEALEVQP* |
Ga0114340_10014196 | F006785 | GGAGG | VSGGDWNTSRERKQLALDAREMEREQLRLEKRQLRDLRWAVERSSLAASDWADLLALQAAHGKEGPLQLWRELVPYWRACQRCNGGADIPAELFPQAAGIFPRTDQPAKAPANRTRSSKGAPRKVRSDAGVARKRSSKGAA* |
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