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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300008107 Open in IMG/M |
| Scaffold ID | Ga0114340_1001257 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Michigan |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 25585 |
| Total Scaffold Genes | 37 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 32 (86.49%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erie, USA | |||||||
| Coordinates | Lat. (o) | 41.7635 | Long. (o) | -83.3309 | Alt. (m) | Depth (m) | 4.9 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000447 | Metagenome / Metatranscriptome | 1128 | Y |
| F006744 | Metagenome / Metatranscriptome | 365 | Y |
| F009143 | Metagenome / Metatranscriptome | 322 | Y |
| F038205 | Metagenome / Metatranscriptome | 166 | Y |
| F066779 | Metagenome / Metatranscriptome | 126 | Y |
| F076101 | Metagenome / Metatranscriptome | 118 | Y |
| F085710 | Metagenome / Metatranscriptome | 111 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114340_10012571 | F076101 | GGA | MYKITLSYDGNAPHMQWDYANEFDAWKDFFSFTDWGFANEYSTVNIYNSEMKCFTKIFYREERKVVTVK* |
| Ga0114340_100125710 | F085710 | GGAG | MNDYYDDIYLDIYLEFGADSVSDPDYAEQLAKDKGVR* |
| Ga0114340_100125711 | F066779 | AGGA | MFSLSYKIEYNTNPEYPLSKNFGTCLGVLCPTEQYANDMLDLLAKRGTILETNLRELENYTPSKRVVIATTRSWE* |
| Ga0114340_10012572 | F038205 | GGA | MAKVKEYLEIIAVDCNECNGAGFIFFGSDNNYDVESCDCVLESWEI* |
| Ga0114340_10012573 | F006744 | AGGAG | MNLDEFKAHITATRQASKAEALSVLSATITKTNEGENLNG* |
| Ga0114340_10012574 | F000447 | AGG | MGFIEFARIDSEGVSWVDLSKATPDELFQIEIGLLNEGAFE* |
| Ga0114340_10012579 | F009143 | AGAAG | MMTKWDTIQADVSDAYVYLDEEEMYEKALAEGAIDLDSDDYDDEELHKSLTLSWED* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |